Paramecium tetraurelia: GSPATT00008773001
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Entry
GSPATT00008773001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03008
Ribosome biogenesis in eukaryotes
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
GSPATT00008773001
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00008773001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptm03021
]
GSPATT00008773001
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00008773001
03009 Ribosome biogenesis [BR:
ptm03009
]
GSPATT00008773001
03016 Transfer RNA biogenesis [BR:
ptm03016
]
GSPATT00008773001
Transcription machinery [BR:
ptm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GSPATT00008773001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
GSPATT00008773001
Ribosome biogenesis [BR:
ptm03009
]
Eukaryotic type
Pre-60S particles
RNases
GSPATT00008773001
Transfer RNA biogenesis [BR:
ptm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
GSPATT00008773001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
Motif
Other DBs
NCBI-GeneID:
5025513
NCBI-ProteinID:
XP_001439728
Genoscope:
GSPATT00008773001
UniProt:
A0CNG4
LinkDB
All DBs
Position
undetermined
AA seq
214 aa
AA seq
DB search
MGVPAFFRWLCARNPKALLEVLENSDESCLSNNPDIDNLYLDMNGIIHPCSHPDQGGIPI
PVTYDDMFVNVFHYIDRLVDIMVLPQEPNQISKEVVDLEQPKNPFEFRKKRNVYEITGEL
KAQIRTLQNTYIEKNFDSNQITPGTEFMQKLNIALQYYIYDRMNNNPLFRNVLIIFNDSS
IPGEGERQNPLICQRSKKTNELQNSQTLFVWSRC
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgggggtacccgcattcttcagatggctttgtgccagaaatccaaaggctctattggaa
gtcttggaaaactcagatgaatcctgcttgtcaaacaacccagatattgataatctctac
cttgatatgaatggaatcatccatccctgctctcatcctgactaaggaggcattccaatt
ccagtcacatatgatgacatgtttgtgaatgtatttcactacatagatcgtttagttgat
attatggtgttgccccaagagccaaattaaattagcaaagaagtcgtagatttagagcag
cctaagaatccattcgaattcagaaagaaaaggaacgtttacgagattactggcgaactt
aaggcttaaattcggacgctttaaaatacatatattgagaaaaactttgatagtaactaa
attactccaggaactgaatttatgcaaaagttgaatattgccttgcagtattacatttat
gatagaatgaacaataatcctctatttagaaatgttctcataattttcaatgattcaagt
atcccaggagagggagaacgacaaaatcctttaatttgttagagatcaaagaaaacaaat
gaattataaaacagttagacattgtttgtatggagcagatgctga
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