KEGG   Paramecium tetraurelia: GSPATT00009104001
Entry
GSPATT00009104001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03013  Nucleocytoplasmic transport
ptm03015  mRNA surveillance pathway
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00009104001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSPATT00009104001
   03015 mRNA surveillance pathway
    GSPATT00009104001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00009104001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00009104001
Enzymes [BR:ptm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GSPATT00009104001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GSPATT00009104001
Spliceosome [BR:ptm03041]
 Complex C
  Other components
   EJC/TREX
    GSPATT00009104001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSPATT00009104001
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 UvrD-helicase Cas3-like_C_2 AAA_19
Other DBs
NCBI-GeneID: 5025894
NCBI-ProteinID: XP_001440109
Genoscope: GSPATT00009104001
UniProt: A0CPJ5
LinkDB
Position
undetermined
AA seq 424 aa
MEDIPDFKEEQQPTGKDIQIDNYNVSQFKNFGLKEEILRAVKEAGFEHPTRVQAESLTNA
LLGEQLICQAKAGTGKTAVFVLTVLNTINIDSNKVECLVITHTRELAQQARDEFLRLGKF
MKNVKVECFYGGGEPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFILDE
ADTMIEDLNMRKDIQDIFFKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITIKPE
QLFLDKLKQYYMKVPEALKFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGEESV
RQLYGGNRLGPDHQKMRQKTYEQFRNGHFRLLVATNLMGRGIDIDKVNYVINFDMPDSLE
TYLHRVGRAGRQETNGVAISFVKSEEESNDGKKQSDDDVLQQILKQYPDKLQQLPQDLST
LDKF
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggaagatattcctgattttaaagaagaacaatagccaactggcaaagacatataaatt
gacaattacaatgtctcttaatttaaaaactttggacttaaagaagagatcttaagagca
gttaaagaggctgggtttgagcatcctacaagagtccaagctgagtcattaacaaatgca
ttactcggagaataattgatctgttaagcaaaggctggaactggaaagactgctgtattc
gtgctcacagtgttgaacaccataaatatagatagcaataaagttgaatgccttgtaatt
acacacacaagagagttagcccaataagctcgagatgaatttttgagattgggaaagttt
atgaaaaatgtcaaagtggagtgtttctatggtggaggtgagcctgtatcagtgaatatc
taaactattgagacagtaaagccataaatagtagttggtactccaggacgtcttaaggat
ctgatttgtgagagaaaagcattgaaagtagatagattgaagtactttatcttggacgaa
gccgatacaatgattgaagatttgaacatgagaaaggacatttaggacatcttttttaag
tcaccataggagaaataatttatggcatttagtgcaacattcacagaatctagtagaaca
tcattgaaaagatttattgcagacaataaacatatttatgagattactattaaaccagaa
taactctttttggacaaattgaagcaatattacatgaaggtgccagaagctcttaaattt
cactatttgagataaattttaaacacctgcaaattaaactaatgcataatctttgttaag
agttcagagaaagctgatgctttggttacagaactcaagaagaagggagaagagtctgtt
aggcaactatatggaggtaatagactaggtcctgatcatcaaaaaatgagataaaaaacc
tatgaataatttagaaatgggcatttccgattgttagtggctactaatttgatgggaaga
ggtattgatattgataaagtcaattatgtcatcaattttgatatgcctgattctttggag
acctatttgcatagagtaggaagagcaggaagataagagactaatggtgttgctatttca
ttcgttaaatctgaggaagaatccaatgatggaaaaaaataatctgatgatgatgtctta
taacaaatcctcaaataatatcctgataaattataatagttgccttaagatttgtctaca
ttagataagttctga

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