KEGG   Paramecium tetraurelia: GSPATT00009719001
Entry
GSPATT00009719001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSPATT00009719001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00009719001
   03036 Chromosome and associated proteins [BR:ptm03036]
    GSPATT00009719001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     GSPATT00009719001
Chromosome and associated proteins [BR:ptm03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     GSPATT00009719001
    COMPASS/SET1 complex (yeast)
     GSPATT00009719001
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd EIF3I WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st WD40_Gbeta CFAP251_N Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 DSE1_N Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_NWD2_C Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_SPT8 B-prop_COPA_B_2nd DUF5074 Beta-prop_WDR11_2nd Beta-prop_SCAP
Other DBs
NCBI-GeneID: 5026586
NCBI-ProteinID: XP_001440801
Genoscope: GSPATT00009719001
UniProt: A0CRI7
LinkDB
Position
undetermined
AA seq 342 aa
MMHEEQEAEITTEQLQSLKMCKIFKDHQKDINAIDFSKDGQYLVSCDDQALNVYDVHQGK
KMRTLYNKVKEIDLVRFTHHNSCVLCVTKKEPYDIYYWSLHDNQILKKFTGHTNIIHWLD
LSPVSDDFLSCSMDGTLRLWNLASEYQTSDGLLDLSAKKTFCVAAFDPSGQVFAVVFLEQ
YYCISNNWLYLYDFKKYHSGSFQSKKINCSQVKCIKFSNNNKYILCSTGDGTILILDAYT
LDTICELSDFNNQGSMIEAGFTPDCNYVISGSETGTIHIWSLPNGNQIAKLDGHQKRCKV
VKFCPTHFLMASGCRNLVLWIPDQFSVDSMNNNNSRRSLMSI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgatgcacgaagagcaagaagcagaaataacgactgaataattgcaatcattgaagatg
tgcaaaatcttcaaagaccaccaaaaagatataaatgctatcgatttttcaaaagatgga
taatatttggtctcttgtgatgattaagctcttaacgtgtatgatgttcattaaggaaaa
aaaatgagaacactctataataaggtgaaggaaatagatcttgtgagatttacacatcat
aattcatgtgttttatgtgttacaaaaaaagagccttatgatatctactattggtcacta
cacgataattaaatattgaaaaagttcactggacacactaatataatacattggttagat
ttatctcctgtctcagatgattttttaagttgtagtatggatggaacattaagattgtgg
aatttagcatcagaatactaaacatccgatggcttattagatttatctgctaaaaaaaca
ttttgtgtagctgcatttgatccatcaggataagtatttgcagtagtgtttttggaataa
tattattgtatatcaaataattggttatacttatatgattttaaaaaatatcattctgga
tcattttaatccaaaaagattaattgtagttaagtaaagtgtattaagtttagtaataac
aacaaatatattttatgttctactggagatggcacaatacttattttagatgcttataca
ttagatacaatttgtgaattaagtgattttaacaaccagggatccatgatagaggctggt
tttactcctgattgcaattacgtaataagtggaagtgaaacaggaactattcatatttgg
agtcttccaaatggaaattaaatagcaaaattagatggacatcaaaaaagatgtaaagtt
gttaaattctgtcctactcactttttgatggctagtggctgtagaaatttagtactttgg
attcctgattaattttctgttgatagcatgaataacaacaatagtagaagaagtttaatg
agcatctga

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