Paramecium tetraurelia: GSPATT00010045001
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Entry
GSPATT00010045001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00010045001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00010045001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00010045001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
Step II factors
GSPATT00010045001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_30
Cas3-like_C_2
T2SSE
ATPase
OB_RRP5_4th
PWI
SRP54
AAA_16
Motif
Other DBs
NCBI-GeneID:
5026955
NCBI-ProteinID:
XP_001441170
Genoscope:
GSPATT00010045001
UniProt:
A0CSK6
LinkDB
All DBs
Position
undetermined
AA seq
1115 aa
AA seq
DB search
MNQLLQLQYISLCSRVLQELENHTGIKDKVLAEYIIDLGRQSKDEKEFKQKLDAAKADFT
DQFTNSLFNIIKKMSPQEKKEVEQPPQIEQVVKEQKFPGLALPNREVVQLEDMEEQSRSR
SLSKNKKKKKDKKKKKDKNKDKDKEKEREKDKEKKDKKEPSSSPQRTHRDIEKGHIYEGV
VTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKVISIVNEKIS
LSMRDVDQNSGQEIEKKAKAMNEYDQVIKQQEQSKDNNRYGAITGVKLDLAQDACKKKAK
RIASPDLWEKTRLEYNSKLVRQIDNKAIVEDSESEGFVSDSEDLEIDMNDYEPPFLKGQT
TKAGINLSPIRVVKNPEGTLQREALHAQQLARERREMREQQQRAINEQNRDKYREDPLAQ
ISGNMNQMQVEIPEWKKEAMFKSSVRNRTHMSIKEWRESLPIYNFKNELLAAIKENRILI
VIGETGSGKTTQITQYLMEAGYGRNGMKIGCTQPRRVAAMSVAKRVAEEMGVQLGDEVGY
AIRFEDCTGPNTIIKYMTDGMLLREALIDKDMSQYSVIMLDEAHERTINTDVLFGLLKQV
VAKRNDFTLIVTSATLDAEKFSSYFFNCKIFRIPGRNFPVEVFFTNEPEEDYLEAAQLCV
IQIHLEEPAGDILLFLTGQEEIDTACQVLHERMKKLGPDAPELIILPVYSALPTELQQKI
FDPAPTGARKIVIATNIAEASITIDGIYYVVDPGFSKIKVYNPKLGMDSLIIAPISQASA
QQRAGRAGRTGPGKCYRLYTESAFNTEMLPTSVPEIQRTNLANTILLLKAMGIHDLLNFD
FMDPPPVQTMIAAMEQLYALGALDDEGLLTKVGRKMAEFPLEPPQAKMLLTAVDLGCVDE
IITIIAMLSEPNIFYRPKDRQQLADQKKARFHRPEGDHLTLLTVYEHWKKNNFSNVWCHE
NYIQARSMRRAQDVRKQLLQIMERYKFQITSCGKDFWKIRKAITAGYFFHVAKKDQAEGY
KTLSDNQQVYIHPSSALFNKGPLWCVYHELVMTSKEYMREVCEIEPRWLIEVAENYFKAH
NQMGQLSKTKKSEKLDPLSCKFGDANAWRLSKRKG
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaattagttactacaattatagtatatttctttgtgttcaagagtgctgtaagaatta
gagaatcatacagggataaaggacaaggtgttggctgaatatattattgatttaggtaga
caaagtaaggatgaaaaggaatttaaataaaagttggatgcagcaaaagctgattttaca
gatcagtttacaaattctttattcaatatcatcaagaagatgtctcctcaagaaaaaaag
gaagtagaacagccaccataaatagaataggtagtgaaagaatagaaattccctggatta
gcattaccaaatcgtgaagtggtttaattagaggatatggaagagtaatcacgatcaaga
tcattatcaaaaaacaagaagaagaagaaggataagaaaaagaagaaggacaaaaataag
gacaaggataaagaaaaggagagggaaaaagataaggagaagaaggataaaaaggagcca
tcttcatccccacagaggactcatagagatatcgagaagggacatatatatgagggtgta
gtaacaaaggtgcaggattttggagtgtttgtgtagatagcaggttttaaaggcagaaag
gaaggcttagtccatatttccaatataagagagaaaagagtgaccaatccttttgatatt
ttgaaaagaaattagaaggtgtttgtgaaagtgattagtattgtgaatgaaaaaatatca
ttgtcaatgagagatgtggattaaaatagtggttaagagatagagaagaaagctaaggca
atgaatgaatatgatcaagtgattaaataataggagtagagtaaggataataatagatat
ggagcaataacaggagtcaaattggatttagcataggatgcttgtaaaaagaaagctaag
agaatagcatctccagatttatgggagaagactagattggaatacaattcaaaattagtt
cgttagatagacaataaagctattgtggaagattcagagtcagaaggttttgtttcagac
tcagaagatttggaaatagatatgaatgattatgaacctccttttttaaagggataaaca
acgaaggcagggataaatttatcaccaattagagttgtgaaaaatccagaagggacttta
taaagagaagctttacatgcttaatagttggcaagggaaaggagagaaatgagagaataa
caataaagagcaataaatgagtagaatagagataaatacagagaggatcctttagcttag
atttcaggaaatatgaattagatgtaagtagaaattcctgagtggaagaaagaagcaatg
ttcaaatcaagtgtaagaaatagaacacatatgagtattaaagaatggagagaatcttta
ccaatttataatttcaagaatgaattgttggctgccattaaagagaatcgtattctcata
gtaataggagaaacaggtagtggtaaaactacttagatcacataatatttaatggaggct
ggatatggtagaaatggaatgaagataggttgcacttaacctagaagagtggcagcaatg
tcagtggcaaaaagagtggctgaagaaatgggagtgtaactaggagatgaagtaggttat
gcaataagatttgaagattgcacaggtcctaatacaattattaaatatatgacagatgga
atgttattaagagaagcattaatagataaagatatgagtcaatatagtgttattatgtta
gatgaggcacatgagagaacaattaatactgatgtgttatttggattattaaaataagtt
gttgctaaaagaaacgatttcacattaattgtaacatcagccactttggatgctgaaaag
ttttcttcttatttttttaattgtaagatatttagaattccaggacgtaactttcctgtt
gaagtgtttttcacaaatgaacctgaagaagactatttagaagctgcctaattgtgtgta
atttagattcatttagaagaaccagctggtgatattctattgtttttaacaggacaagaa
gaaatagacacagcatgttaagtgcttcacgagagaatgaagaagttgggtccagatgct
cctgaattgattatcttacctgtttattctgctttacccacagaattacaacagaagatt
tttgatcctgcccctactggagccagaaagattgttatagcaactaatattgctgaagca
tcaatcactatcgatggaatttattatgtggttgatccagggttctctaaaatcaaggta
tataatccaaaattgggtatggattcattaattattgctccaatcagttaggcatctgca
taataaagagctgggagggcaggaagaactggcccaggaaaatgctatagattatatact
gaatcagcatttaatacagaaatgttacccacttcagtacctgaaatatagagaactaat
ttagcaaatacaattttattattaaaagctatgggaatacatgacctattgaattttgac
tttatggatcctccacctgttcaaactatgattgcagctatggaataattgtatgcattg
ggagctttggatgatgaaggattgctaacaaaagtaggtaggaagatggcagaattccct
ttggaaccacctcaagccaaaatgttattgactgcagttgatctgggatgtgtggatgaa
atcattacaatcatagcaatgttatcagaaccaaatattttctacaggccaaaagataga
taacaattagcagatcagaaaaaggccaggtttcatagaccagagggtgatcatttaaca
ttgttaacagtctatgagcattggaagaagaacaattttagtaatgtgtggtgtcatgaa
aattatatctaagcaagatccatgagaagagcttaagatgttagaaaacaattattataa
attatggaaagatataagttctaaattacttcttgtgggaaggacttctggaaaatcaga
aaagctattactgctggttatttcttccatgttgctaagaaagattaagctgaaggatat
aaaactctatctgataatcaataagtctatatccatcctagtagtgcattatttaacaaa
ggaccgttgtggtgtgtgtatcatgagctagtcatgacttcgaaagagtatatgagagaa
gtatgtgaaatagaacctagatggcttattgaagttgctgaaaattatttcaaggctcac
aatcaaatgggataactctcaaaaacaaagaaatcagagaaactcgatccattaagttgc
aagtttggagatgcaaacgcatggagactaagtaagcgtaaaggttga
DBGET
integrated database retrieval system
