Paramecium tetraurelia: GSPATT00012653001
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Entry
GSPATT00012653001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00012653001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00012653001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00012653001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
Step II factors
GSPATT00012653001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
Microtub_bd
AAA_14
Flavi_DEAD
T2SSE
AAA_7
ATPase
ResIII
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
5030328
NCBI-ProteinID:
XP_001444544
Genoscope:
GSPATT00012653001
UniProt:
A0D280
LinkDB
All DBs
Position
undetermined
AA seq
659 aa
AA seq
DB search
MERESRSRDDSKGRQAPFYRESLYRSSSSVSSQFKVSSGPMLFKGTENSSVQKNAQPQFE
EDADGFKKPPARSEKLEEERKRNKLLNEYTAFEWENIEQESDRKWYDYDEDDIGNASQQD
WGGEVFKGQKEEFKFEEYSKRKGQTVRQSEKNQEQNRWELNRMIASDVFKRKADAYDFYE
EENEKRVVIHVHDIKPPFLDGKVVYTTQLTQVQIVKDPNSDMAKLAKQGSEVLMLMREKQ
DKTKMRERFWELSGSKMGKVMNLDRKKEMDPDRHLLNEDGDYDFKASSRYQTALQRVTQG
QSDFARNKTIKEQREYLPVFHCRSELVQLLHDNRVCIIVGETGSGKTTQLTQYLYEEGYT
NTGVIGCTQPRRVAAVSVAKRVAEEMGVELGSKVGYAIRFEDYTSKDTVIKYMTDGVLLR
ESLQDPDLEKYSAVIMDEAHERSLNTDVLFGILKKVAQRRRDIRIVITSATMNAKKFSDF
FGGVPIYKIPGRTFPVDVRFEKAPAQDYVRSAIKKTIEVHIQQPPGDVLIFMTGQEDIET
TCYLLAEELNKLSEATPPLLILPIYSQLRSEEQARIFEKSEFRKCIVATNIAETSLTLDG
VKYVIDTGYCKMKVYNPRIGMDALQVTPISQANADQRKGRAGRTGPGICFRLYVGKQYS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagagagtcgttcgagagatgatagtaaaggtagacaggctcctttttatagg
gaatctctctatcgaagttcgtcttcagtaagcagctagtttaaggtttcgtctggccct
atgttgttcaaaggtacagagaattcgagtgtgcagaaaaatgctcaaccctaatttgag
gaagatgcagatgggtttaagaagccccctgcacgttcagagaagttggaagaggaaagg
aaacgcaataaattacttaatgaatacacagcatttgaatgggaaaacatagaataagaa
tcagataggaaatggtacgattatgatgaagatgatattggtaatgcttcctagtaagat
tggggaggtgaagtttttaaaggttaaaaagaggaatttaaatttgaggaatatagtaaa
cgcaaaggttaaactgtaagacaatcagaaaagaattaagaataaaatagatgggaactc
aatcgtatgattgcatcagatgttttcaagagaaaagcagatgcttatgatttttatgaa
gaagagaatgaaaaaagagttgtcatacatgtacatgatattaaacctccttttttggat
gggaaagttgtctatacaacttaattgacataagtctaaattgtcaaggatcctaattca
gacatggctaagttggcaaaacaaggttcagaagtcttaatgttaatgagagagaaatag
gataaaactaaaatgagggagagattttgggaattaagtggatcaaaaatgggaaaggta
atgaacttagatagaaaaaaagaaatggatccagacagacatctattgaatgaggatgga
gattatgatttcaaagcatcttctagatattaaacagctctataaagagtcacttaaggt
caaagtgattttgctagaaataaaacaatcaaagaacaaagagaatacttaccagtattt
cactgtagatctgaattagttcaattgttacatgataacagagtttgtattattgtagga
gaaactggatcaggtaaaactacttaattgacataatatttatatgaagaaggctatact
aatactggtgttatcggatgtacttaaccaaggagagtggcagcagtatcagtggctaaa
agagtagctgaagaaatgggagtagaattaggtagtaaagtaggatatgccattcgtttt
gaagattatactagtaaagatactgttatcaaatatatgacagatggagtcttattaaga
gaatctttgtaagatcctgatcttgagaaatactctgctgtgattatggatgaagcacat
gagagatcattgaatacagatgttctattcggaattcttaagaaggtggcataaaggaga
agagacattagaattgtaatcacatctgcaacaatgaatgccaagaaattcagtgatttc
ttcggaggagtgcccatctataaaatacctggtagaacttttccagttgatgtcagattc
gaaaaagcacctgcctaagattatgtgagaagtgcaatcaagaaaaccattgaagttcat
attcaataacctcctggagatgtattgatatttatgacaggacaggaagatattgaaact
acttgttatttattagccgaggaactcaataaattaagtgaagctactcctccactctta
atattaccaatatattcataattaagatctgaagaataggcaaggatttttgaaaaaagt
gaatttagaaaatgcattgtggcaactaatatagcagagacatctctaactttggatggt
gtaaaatatgtgattgacacaggatattgtaaaatgaaagtgtataatcccagaattggt
atggatgctttataagtcacaccaatttcctaggctaatgcagattaaagaaaaggtaga
gctggacgtacgggacctggtatttgttttagattatatgttggaaaataatattcctga
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