KEGG   Paramecium tetraurelia: GSPATT00013208001
Entry
GSPATT00013208001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03018  RNA degradation
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00013208001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00013208001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00013208001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00013208001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSPATT00013208001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GSPATT00013208001
Spliceosome [BR:ptm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GSPATT00013208001
SSDB
Motif
Pfam: LSM Hfq DUF6897
Other DBs
NCBI-GeneID: 5030925
NCBI-ProteinID: XP_001445140
Genoscope: GSPATT00013208001
UniProt: A0D3X6
LinkDB
Position
undetermined
AA seq 83 aa
MNQLPKESIIKLQSHINKEVVIQFQGGRQVKGTLLSFDNLLNLVLDEVRELPSQRILGLV
ICRGALINSFAIDGMVEIENPYM
NT seq 252 nt   +upstreamnt  +downstreamnt
atgaattaattaccaaaagagtcaattataaagttgtaatcacacataaacaaagaagtt
gtaatataattttaaggtggaagacaagtcaaaggaaccttattatcatttgataatctg
ctcaatctagtattggatgaagtgagagaattgccatctcaaagaatattaggacttgta
atttgcagaggagctttgataaatagttttgcgattgatggaatggtcgaaattgaaaat
ccatatatgtga

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