Paramecium tetraurelia: GSPATT00013208001
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Entry
GSPATT00013208001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00013208001
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00013208001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00013208001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00013208001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSPATT00013208001
mRNA degradation factors
5'-3' decay
Lsm complex
GSPATT00013208001
Spliceosome [BR:
ptm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSPATT00013208001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
DUF6897
Motif
Other DBs
NCBI-GeneID:
5030925
NCBI-ProteinID:
XP_001445140
Genoscope:
GSPATT00013208001
UniProt:
A0D3X6
LinkDB
All DBs
Position
undetermined
AA seq
83 aa
AA seq
DB search
MNQLPKESIIKLQSHINKEVVIQFQGGRQVKGTLLSFDNLLNLVLDEVRELPSQRILGLV
ICRGALINSFAIDGMVEIENPYM
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atgaattaattaccaaaagagtcaattataaagttgtaatcacacataaacaaagaagtt
gtaatataattttaaggtggaagacaagtcaaaggaaccttattatcatttgataatctg
ctcaatctagtattggatgaagtgagagaattgccatctcaaagaatattaggacttgta
atttgcagaggagctttgataaatagttttgcgattgatggaatggtcgaaattgaaaat
ccatatatgtga
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