Paramecium tetraurelia: GSPATT00016170001
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Entry
GSPATT00016170001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00016170001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00016170001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00016170001
03009 Ribosome biogenesis [BR:
ptm03009
]
GSPATT00016170001
03016 Transfer RNA biogenesis [BR:
ptm03016
]
GSPATT00016170001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00016170001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GSPATT00016170001
Spliceosome [BR:
ptm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GSPATT00016170001
Complex C
U4/U6.U5 tri-SnRNP related factors
GSPATT00016170001
Ribosome biogenesis [BR:
ptm03009
]
Eukaryotic type
Pre-60S particles
Helicases
GSPATT00016170001
Transfer RNA biogenesis [BR:
ptm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GSPATT00016170001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Helicase_dom4_arc
AAA_22
AAA_30
CM_2
Motif
Other DBs
NCBI-GeneID:
5034510
NCBI-ProteinID:
XP_001448725
Genoscope:
GSPATT00016170001
UniProt:
A0DE61
LinkDB
All DBs
Position
undetermined
AA seq
963 aa
AA seq
DB search
MDLFGVFETNANADGIQVENQVEEEVSMNVEAQEKVEAFKIIKNQENEGCIHEWYTPEDY
QPIQEKKQNAKQYKFTLDPFQKVAVKTLESNESVLVAAHTSAGKTAVAEYAIAMAKRDKQ
RVVYTSPIKALSNQKYRELQQEFGDVGLVTGDVTLNENAFCLVMTTEILRSMLYRGSEIV
REVAWVIMDEVHYMRDRERGVVWEETIILLNQNVRFVFLSATIPNASEFAEWVCRIKRQP
CHVVYTDYRPTPLQHYLFPSGAEGIYLVVDETGKFKEDKFQEAVAKLEENVENTRKRKAT
EGSDLFKLMKMIQERELAPAIVFSFSKREVEGYAIGMQKLDLTTPKEKENIETIYKNAMN
CLSEEDRQLPQIQLMLPILKKGIGIHHGGLLPIVKEIIEILFQEGYLKALFSTETFSMGL
NMPSRTVVFTSVRKFDGEQFRWIQGGEYIQMSGRAGRRGIDDKGVCILMCDEKMDQEVAK
SMLKGKSDCLNSSFRLSYNMLINSMRMEDTDPEFIIKKSFHQFQNDRQLPEMKEKLSDFK
QKRDQIQIENEDKLGNYHDLISQSTHIYNKIRKIIYQPQIVLPFMHIGRIIRIKGSDGDW
GWGIQINFMQKKFGNKKNKDQEQSIILDVMLYTYLDNIKNEPLQPQLSYDQEGELEIIST
IKLNLPKDLRTNESKQQIKQTMIKLLKEFKGQPPLIHPIKDMKINDDQLDQLLEQRQSLL
EQVEQVKKDLNNQNLEQELSIYDEKIKLGQTIKLLNKQIEESSQMVLSGDLKRMKRILRR
LQYISKDEIVQMKGKVACEISAGDEIMLTELLVSGLFNDLSSEEICAVLSVFVHDENNSE
KFQLKNDKMQQLYTKVLDQAKYLYTVYTESKMNIDEKEYLATFKSQMMEVTLAWCQGQSF
LQVCKMTDLFEGSIIRCLRRLDELIKQLEEAAKVIGNKELENKFKESSKKLKKGIVFAAS
LYL
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttggtgtttttgaaacaaatgcaaatgcagatggaattcaagtggagaac
caagtggaggaagaagtgtcaatgaatgtagaagcataggagaaggttgaggcatttaag
ataataaaaaaccaagagaatgaagggtgcattcatgagtggtacacacctgaagattac
taaccaattcaagaaaagaaacagaatgcaaaataatataagtttactttggatccattc
caaaaagtagcagtgaagactctggaatcaaatgaatcggtattggtggctgcccataca
agtgcaggcaaaacagcagtagcagaatatgcaatagccatggctaagagagacaagcaa
agagttgtgtatacctctccaatcaaggctttatcaaattagaaatacagagaattgtaa
taggaatttggagatgtgggattggtgacaggagatgtgacattgaatgagaatgccttt
tgtttggtaatgacaacagaaattttaaggagtatgctgtatagaggctctgaaattgtg
agggaagtagcatgggtaattatggatgaagtacattatatgagagatagagaaagagga
gtggtttgggaagagaccatcatcttattgaattaaaatgttcgatttgtctttttatct
gctacaattcctaatgctagtgaatttgctgaatgggtctgcagaatcaaacgccaacct
tgtcatgttgtctatactgattatagacctacacctttacagcattatttatttccaagt
ggtgctgagggaatctatttagttgttgatgaaacaggaaaatttaaagaagataaattt
caagaggcagtagcaaagttggaggaaaatgttgaaaatacaaggaagagaaaggctact
gagggttcagatctatttaaattgatgaagatgatctaagagagagaattagcaccagcc
atagtattctccttttctaaaagagaagtagaaggatatgctattggaatgtagaaattg
gatttgactactcctaaagaaaaagagaacattgaaaccatctataaaaatgccatgaat
tgcttatctgaagaggatagacaactaccacaaattcaattaatgcttccaattttaaag
aagggaattggaatccatcatggtggattattaccaatagtcaaggaaatcatagaaatt
ctcttttaagagggatatcttaaggctttattttcaactgaaacattttctatgggattg
aatatgccctccagaactgtggtgttcacttcagtcagaaaattcgatggtgaataattc
agatggattcaaggaggagagtatattcaaatgagtggtagagctggtagaagaggtata
gatgacaagggagtgtgcattttaatgtgtgatgagaagatggactaagaagtggctaaa
tctatgctcaagggaaaatcagattgtttgaattcctcattcagattatcatacaatatg
cttatcaattcgatgagaatggaagacacagatcctgaattcattatcaagaagtctttc
cattaattctagaatgataggtaattacctgaaatgaaggagaagttatcagacttcaaa
caaaaacgagactaaatataaatagaaaatgaagacaaattgggtaattatcatgatcta
atctcttaatctacacacatctacaataaaataaggaagatcatctatcaaccacagatt
gtcttaccatttatgcacataggcagaatcattagaatcaagggatcagatggagattgg
ggatggggcatataaatcaattttatgcaaaagaagtttggaaataaaaagaataaagat
caagagcaatccatcattttagatgtgatgttgtatacatatttagataatattaagaat
gaaccactctaacctcaattatcatacgatcaagaaggagagttggaaataatcagtacc
atcaaattgaatctacccaaagaccttagaaccaacgaaagcaaataacaaattaaatag
actatgattaaattgctcaaagaattcaagggatagcctcctctcattcatccgattaag
gacatgaagattaatgatgactaattggatcaattgcttgaatagagataatcacttcta
gaacaagtagaataagtgaagaaggacctaaataattagaatctggaacaggaattatca
atctatgatgagaaaattaaattaggacaaacaatcaaattgctgaataaatagattgag
gaaagttcgtaaatggttttgagtggagatctcaagagaatgaaaagaattctaagaaga
ttataatacatatccaaggatgaaattgtgtaaatgaagggtaaagtggcttgtgaaata
tcagcaggagatgagattatgttaactgaactattagtaagtggactcttcaacgatttg
tcttctgaagagatttgtgctgtattgagtgtctttgtgcatgatgaaaataatagtgaa
aagttctaacttaagaatgataaaatgcaataattatacacaaaagtgcttgatcaggct
aaatatctttatactgtatacacagaatcaaagatgaacattgatgaaaaagagtattta
gctacattcaagagttaaatgatggaggtaaccctggcttggtgttagggatagtcattc
ttgtaggtttgcaaaatgactgatctgtttgaaggatccatcattagatgtcttagacga
ttggatgaattaattaaataattggaagaggctgctaaggtgattggaaataaggaattg
gaaaataagtttaaggaaagttctaagaagcttaagaaaggtattgtttttgctgcatct
ttatatttgtga
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