KEGG   Paramecium tetraurelia: GSPATT00017116001
Entry
GSPATT00017116001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03013  Nucleocytoplasmic transport
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00017116001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSPATT00017116001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00017116001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00017116001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     GSPATT00017116001
Spliceosome [BR:ptm03041]
 Complex C
  Other components
   EJC/TREX
    GSPATT00017116001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSPATT00017116001
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st eIF2A EIF3I DSE1_N Beta-prop_CAF1B_HIR1 Beta-prop_ELP1_1st Beta-prop_EIPR1 PD40 Beta-prop_NOL10_N Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C WDR90_beta-prop_4th CFAP251_N B-prop_COPA_B_2nd Tricorn_N Beta-prop_Vps41 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_WDR75_1st Beta-prop_IP5PC_F DPPIV_N INI1_DNA-bd
Other DBs
NCBI-GeneID: 5035927
NCBI-ProteinID: XP_001450142
Genoscope: GSPATT00017116001
UniProt: A0DI78
LinkDB
Position
undetermined
AA seq 250 aa
MFYQQFKEYPKNSQREKTQQERKTIKSMDWNCNGSYLATSSDSTIKIWSFDGNNIKRSTD
LKQGSEQLEKLLFHPTQPDIIASITKEYVKIWDIRTKQSVRQEKKEQMGIACWSPNGNEL
AVGTKQNKETQIMFLDMQGGERQIMYQPKDKDKNFELKNIMYDKDVFVAVGQQNGVGMIQ
FMDVNNPQLPPLHQMEAHRAGITQCKFSKDGQHMYTGAQDSLIILWQLPDFVVCRIIDDS
GIRDQVDVCF
NT seq 753 nt   +upstreamnt  +downstreamnt
atgttttattaacaattcaaagaataccccaaaaattcataaagagaaaagactcaataa
gaacgtaagactatcaaatcaatggattggaattgcaatgggagctatttggctacatca
agtgattccactattaaaatttggtccttcgatggaaataacatcaagagatcaaccgat
ttgaagcaaggttcagagcaattggagaagttgttatttcatccaacacaaccagacata
atagcatccattactaaggagtacgtgaagatttgggatattcgcacaaaatagagtgtg
agacaagagaagaaggaataaatgggtattgcctgttggagccctaatggcaatgaattg
gcagtgggtaccaaatagaataaggaaacacagataatgtttttagacatgtaaggagga
gagagataaataatgtattagccaaaagataaagataagaatttcgagttaaagaatatt
atgtatgacaaagatgtgtttgtcgcagttggttaacaaaatggagttggtatgatttaa
tttatggatgtcaacaatcctcaattgcctcctcttcattagatggaagctcatagagct
gggattacttaatgcaaattcagtaaggatggctagcatatgtatactggtgcctaggat
tctctgattatattgtggcaattaccagattttgttgtgtgcaggataattgatgacagt
ggaatcagagattaagtcgatgtctgtttttga

DBGET integrated database retrieval system