Paramecium tetraurelia: GSPATT00018356001
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Entry
GSPATT00018356001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12602
WD repeat-containing protein 61
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00018356001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00018356001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
GSPATT00018356001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_DCAF12
WD40_like
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_RIG_1st
Beta-prop_EIPR1
VPS11_N
Beta-prop_VPS8
BBS2_Mid
Beta-prop_Nup120_160
Beta-prop_WDR35_2nd
Baculo_LEF-11
Beta-prop_LRRK2
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
5037320
NCBI-ProteinID:
XP_001451535
Genoscope:
GSPATT00018356001
UniProt:
A0DM71
LinkDB
All DBs
Position
undetermined
AA seq
287 aa
AA seq
DB search
MIQEITNFSIPESPSCMDISKEFLAIGTLDENVFLYSQPFQSKSNETILKNHLLGVIDLS
INADETQIVVSSLDNYLRIWDIDDKKLISEIQCDAFANWKVRFFDSSIVVTSGEMGIINF
YHVDTKERIQKIETDPIYYSSSLQIHDQLLAVGNEGGSLFLIDQKFQKKAIKPHSKPIKS
ILFLDNNKILTGSEDGLIKLIDLEKFEIIKQFRGHKYGVMDFCKINEKSFVSCSTDRTIR
VWDVNQIYSQKHIQTMNDKPGGISGIRYKNDQIIAAHDCGIISFYAI
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgatctaggagattacaaatttctcaattccagagagtccaagttgcatggatatttca
aaagagtttttggccattggcacattggatgaaaatgtatttctctactctcaacccttt
caatccaaatcgaatgaaaccatattgaaaaatcatcttttgggagtcatagatttatct
atcaatgcagacgaaacctaaattgtggtctcatcattagataattatcttcgaatctgg
gatatcgatgataagaagctgatttctgaaatataatgtgatgcctttgccaattggaaa
gtcagattttttgattcgtcaattgttgtgacttctggggaaatgggaatcattaacttt
tatcacgttgacaccaaagagagaattcaaaaaatagaaacagacccaatttattattca
agttcactctagattcatgattaattgttagctgttggtaatgaaggtggcagtctattt
ttgattgattaaaagtttcaaaagaaggcaatcaaacctcattcaaaaccaataaagtca
atcctatttctggacaacaacaaaattctaacaggatcagaggatggattaattaaactc
atagacctagagaaatttgaaatcattaaacagtttagaggtcataaatatggtgtaatg
gatttctgtaaaatcaatgagaaatcatttgtcagttgctctacggacagaacaattcga
gtatgggatgttaaccaaatctactctcagaaacatatacagaccatgaatgacaaacct
ggaggaatcagcggtattcgatacaagaatgaccaaatcatagctgctcatgattgtggc
attataagcttttatgctatatga
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