Paramecium tetraurelia: GSPATT00021156001
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Entry
GSPATT00021156001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00021156001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00021156001
Enzymes [BR:
ptm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GSPATT00021156001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GSPATT00021156001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
R3H
YqzE
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
5040695
NCBI-ProteinID:
XP_001454910
Genoscope:
GSPATT00021156001
UniProt:
A0DWU6
LinkDB
All DBs
Position
undetermined
AA seq
516 aa
AA seq
DB search
MFIDIDNFEQNKQTIMEQIKLCDFLGFDLELTGIKGEYQDTFEELPFERYLKIRKVSMKY
NIIQFGLCIFIKKQKGYVAFPYTFYLFPQDLDDFVGLQVGAVFFNSEHGMDWNRWINKGV
GYLNRAQYQKLQDDYNKDFQQLDQEELKNQFEKILEDVKPIDKKTIRELIDKLEKFNKSD
EKQITIETTNGYQRKVIYTYLEAYQKNMIGESLLKGEMKITKLTNAEKQAKDEEKYLLKT
NRFQTKTGFYQIWECILNSKKYIVGHNCFADIMFCYSHFVQCPPISWEEFKEDVVKHWPP
IYDTKYIIQSAQPLEKIRSKFETSTSVENLAEFIKNNMNYIQIDVNLDQNAYHTAGFDAY
MTGFIFINLTKDFTQQELLSQKNKLNQFKNNYSINLNTAEDIKLTQKYIIYIKFPEEERK
NQQVQKSQRIQFQKQAFDNIINALKQQQFDISAYRIIHYKYIYIEFNQEYDLKQIQSALQ
QVGEFQECQLFNEKQYEMDRREFKEKEAKSDKFDKR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcgacattgataattttgagcaaaacaaataaacaataatggagcagataaag
ctatgtgactttctggggtttgatcttgagttaactggaataaaaggggaatattaagat
acatttgaagaattaccatttgaaagatatttaaagatacgaaaagtaagtatgaaatat
aatatcattcaatttggattgtgcatctttatcaaaaaataaaaagggtatgtcgcattt
ccttatacgttctatttgtttcctcaagatttagatgacttcgtgggtttataggtggga
gcagtattttttaacagtgagcatggcatggattggaataggtggattaacaaaggagta
ggttatttgaacagggcacaatattagaagcttcaagatgattataacaaagacttccaa
taattggattaggaagagttgaagaaccaattcgaaaagatcttggaagatgtcaaaccg
atagataaaaagacaattcgagagttaattgacaagttagagaaattcaataagtctgac
gagaaacaaataacaatagaaacgacaaatgggtatcaaaggaaagtgatttatacttac
ttagaggcttattaaaaaaatatgattggggaatctttattgaaaggagaaatgaaaata
acaaaattaacaaatgcagaaaaataggctaaggatgaagaaaaatatttattaaaaaca
aatagattttaaactaaaacaggattctattaaatttgggaatgcattttgaattctaaa
aagtacattgtaggacacaattgttttgcagatattatgttttgttacagtcattttgtt
taatgtcctccaatatcatgggaagaatttaaggaggatgttgttaagcattggccacca
atatatgatacaaaatacatcatttaatcagcttaaccattggaaaaaattagaagtaaa
tttgagacatcaacttctgttgaaaatctggctgaattcataaaaaacaacatgaattac
atttaaatagatgtgaatttagattaaaatgcctatcatactgctgggtttgatgcttat
atgactggatttatatttatcaatttgaccaaagactttacccaataagaattattgagt
caaaagaataaattaaattaatttaaaaacaattatagtattaatttgaatactgctgaa
gacattaagttaacatagaaatatataatctacatcaaatttccagaagaagagagaaaa
aattaataagtctaaaagtctcaaagaatataattttaaaagtaagcctttgacaatatt
attaatgctttaaagcaacagcaatttgacatatcagcttaccgtattatccattataaa
tatatttacattgagttcaactaggaatatgatctgaagtagattcaaagcgccttataa
taagtcggggaattttaggaatgttaactctttaatgagaaacaatatgaaatggataga
agagaattcaaagagaaggaggcgaagtcagacaaatttgataaaagatga
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