Paramecium tetraurelia: GSPATT00025153001
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Entry
GSPATT00025153001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03013
Nucleocytoplasmic transport
ptm03015
mRNA surveillance pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00025153001
09122 Translation
03013 Nucleocytoplasmic transport
GSPATT00025153001
03015 mRNA surveillance pathway
GSPATT00025153001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00025153001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00025153001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSPATT00025153001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GSPATT00025153001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
EJC/TREX
GSPATT00025153001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GSPATT00025153001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
CMS1
Cas3-like_C_2
AAA_19
AAA_30
Rotamase_2
Phage_integrase
Motif
Other DBs
NCBI-GeneID:
5045601
NCBI-ProteinID:
XP_001459816
Genoscope:
GSPATT00025153001
UniProt:
A0EAV2
LinkDB
All DBs
Position
undetermined
AA seq
429 aa
AA seq
DB search
MSGLEDIPEFYDDPQQPTKQEIQKYDNYNVSQFKNFGLKEELLRAVKEAGFEHPTRVQAE
SLTNALQGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFL
RLGKFMKNIKVECFYGGGEPVTVNISTIETVKPQIIVGTPGRLKDLICERKALKVDRLKY
FILDEADTMIEDLNMRKDIQDIFLRSPQEKQFMAFSATFTESSRTSLKKFIADNKHIYEI
TIKPEQLFLDKLKQYYMKVPETLKFHYLRQILNTCKLNQCIIFVKSSEKADALVAELKKK
GEDSVRQLYGGNRLGPDHQKLRQKTYEQFRNGHFRLLVATNLMGRGIDIDKVNYVINFDM
PDSLETYLHRVGRAGRQETNGVAISFVKFEEEASDVKKHTDDEVLQQILKQYPDKLQQLP
QDLSTLDKF
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcggattagaggatattcctgaattttatgatgatccataacaacctacaaaatag
gaaatataaaaatatgacaattacaatgtctcataattcaaaaactttgggctgaaagag
gagctcttacgagccgtaaaagaagccgggtttgagcatcctacaagagtccaagccgaa
tcgttgacaaatgcactataaggagaacaattgatttgccaagcaaaagcaggaacagga
aagacagctgtgtttgttctgactgtattgaatacgatcaacactgaaagcaacaaagtg
gaatgtcttgtaatcactcacacaagagagttggcccaataagctcgtgatgaattttta
agattgggaaagtttatgaaaaatatcaaagttgagtgcttttatggaggaggagaacca
gtcactgtaaatatctcaacaattgaaacagtcaagccttaaattatagttggtactcca
ggacgtcttaaggatttgatttgcgagagaaaggctttgaaagtagacagattgaagtac
ttcatattggatgaagccgatactatgatagaagatttaaacatgagaaaggacatctag
gacatcttcttacgttcaccacaagagaaataatttatggcatttagtgcaacctttaca
gaatcaagcagaacatcactcaaaaagttcattgctgataacaaacacatttatgaaatt
acaatcaaaccagaacaactctttttagataaattgaagtaatactatatgaaagtacct
gaaactcttaaattccattatttgagataaatcttaaatacatgcaaattaaatcaatgc
atcatttttgttaagagctcagaaaaggccgatgcattagttgctgaactcaaaaagaag
ggagaggattcagtcagataactctatggtggcaacagattgggaccagaccattaaaaa
ttgagacaaaagacctatgaataattcagaaatggacatttcagattactggttgctacc
aacctaatgggaaggggtattgatattgataaggtcaattatgttatcaattttgatatg
cctgattctttggaaacttatttacatagagttggaagagctggcagataagagactaat
ggagttgcaatctcttttgttaaatttgaagaagaagcttcagacgttaaaaagcataca
gatgacgaagttttataatagattcttaaataatatccagacaaattacaatagttaccc
taagatttatcaacattagacaagttttga
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