Paramecium tetraurelia: GSPATT00025388001
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Entry
GSPATT00025388001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00025388001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00025388001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
GSPATT00025388001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Staufen_C
Motif
Other DBs
NCBI-GeneID:
5045836
NCBI-ProteinID:
XP_001460051
Genoscope:
GSPATT00025388001
UniProt:
A0EBI7
LinkDB
All DBs
Position
undetermined
AA seq
676 aa
AA seq
DB search
MQSHAKQVVALINQLPKKDELRFLEKQPGNKKFISETNKVFISVINGLRSLVGDVQANST
TIPFKQIEETLDQFLENAAIQYDRMNKLSLAPKQPQIQKTNQLKPKDIYGFADAIQLNKL
PFIPVLKYKQYAQTELDQKIVEAQNNPYQFFEKYEIDEFAHPYYEEILRLTPQDFVLDVP
SKINRYRDLEPPMMITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQ
LSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDT
FHASKELQLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYD
RMRQDLKKLNKPNDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQDQSLQTILNKQDRR
MEAKSFELMVRLLELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKSQLGGDKNI
HEVVKDNLWQFLKVLLEFDEKIPTVNIIQEEQQNTTQIQNDEVQPNFQVEPLKIVQFQVN
IKKLKNQNKCIVENNLKNENVELIKSQFYCESPFKLLNVFYEGLGSQIFQSMKEQSQQQK
QLIEETQQQKIEKINTSDFIKLPKLDEPNHDQKNDLDVRLNNTLQNQHGTKILKRHQKIE
QQRTQKSNISNRFELS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtaaagtcatgcaaaataagtggttgcattaatcaatcaactccccaaaaaagatgaa
ctgagattcttagagaaacaaccaggaaacaaaaaatttatttctgaaaccaataaagta
tttatctcagtcattaatggactaagatctttggttggagatgtttaagcaaattcaacc
actatcccatttaaataaatagaagaaacattagattaattcttagaaaatgcagccatt
taatatgatagaatgaataaattaagtttagctccaaaacaaccccaaatataaaaaaca
aactaactcaaaccaaaggatatttatggatttgctgatgcaatttagcttaataaatta
ccttttattcctgtcttaaaatacaagcagtatgcttagacagaattagattaaaaaata
gtagaagcctaaaataacccatattaattttttgagaaatatgagatagatgaatttgct
catccttactatgaagaaatattgagattgacaccccaagattttgttcttgatgtacca
tcaaaaattaatagatatagagatttagaaccaccaatgatgattactaatgcagatcac
ttaggagaactcgtccttaaaatacaacaagaagtagattaaaatggatttagcgaaata
gctgtagatttagagcataatcattaaatttcatatttgggaatcacttgcttgatttaa
ttaagcactagatcacaagattatataatagatccttttcctttatggaaatagctagga
gacatgttgagtgttatttttgcaaatcctaaaatagtaaaggttttccatggggctgaa
aacgatgtataatggctataaagagactttggtttatatatagtaaatctattcgatact
ttccacgcatccaaagagttacaacttatgtaaaactcgttttagtttttgctatcagaa
tattgtaagaagtctacagataaaacttattaaactgctgattggacttaaagaccattg
cctgatgaaatgatcaagtatgcttagatagatactcattatctactttatatttatgat
agaatgaggtaggatcttaaaaaattaaataaaccaaatgataatataagcaatattcca
aattactatctcgaagctgtattaaaaagaagtaaagagacagctctcaaaatttacaag
aaacctttgtaagattaagattaatctttgcaaacaattcttaataagtaagataggcga
atggaagcaaaaagttttgaattaatggttcgattattagagttaagagaagaattagga
attaaacatgatcaaaatcctagatattttttaccaaatccatttttatttaaaatagtt
gaatctaaacctacaacaatttaagaactcaaaagtcaattaggaggtgataaaaatatt
catgaggttgtaaaagacaatctctggtaattcctaaaagtgctactggaatttgatgag
aaaatcccaactgtaaatattattcaggaagaataatagaacacaacataaatatagaat
gatgaggtacaacctaatttctaagttgaaccattaaaaattgtccagttttaagttaat
attaagaaattaaaaaatcaaaataaatgtattgtggaaaataatttaaaaaatgaaaat
gttgaattaataaaatcccaattttattgtgaatcgccttttaaattattaaatgttttt
tatgagggtctaggatcttaaatcttccaatctatgaaggaataaagttagtagtagaaa
taattaattgaagaaacacagcaataaaaaatagaaaaaattaatacatcagatttcata
aaacttcctaaactagatgaaccaaatcatgattaaaagaatgatttagatgttagatta
aataatacactataaaattagcatgggacaaagatattaaaaagacactaaaaaatagaa
taataaagaacttaaaaatctaatattagtaacagatttgaactgtcatga
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