KEGG   Paramecium tetraurelia: GSPATT00027123001
Entry
GSPATT00027123001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K10754  replication factor C subunit 1
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03030  DNA replication
ptm03410  Base excision repair
ptm03420  Nucleotide excision repair
ptm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GSPATT00027123001
   03410 Base excision repair
    GSPATT00027123001
   03420 Nucleotide excision repair
    GSPATT00027123001
   03430 Mismatch repair
    GSPATT00027123001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptm03032]
    GSPATT00027123001
   03400 DNA repair and recombination proteins [BR:ptm03400]
    GSPATT00027123001
DNA replication proteins [BR:ptm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    GSPATT00027123001
DNA repair and recombination proteins [BR:ptm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     GSPATT00027123001
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_lid_RFC1 RuvB_N PTCB-BRCT AAA_16 AAA_14 RCF1-5-like_lid nSTAND3 AAA_5 AAA_6 AAA_22 RNA_helicase NTPase_1 AAA_19 Tugs AAA_18
Other DBs
NCBI-GeneID: 5047957
NCBI-ProteinID: XP_001462172
Genoscope: GSPATT00027123001
UniProt: A0EHK8
LinkDB
Position
undetermined
AA seq 972 aa
MSNSRKRLIRNSPESKSNHTEVLSDIEEEYNLNNYKYDAKSKNGQQKQKQQQQQAQKQTQ
QSMGEKQTPQISDVFPNQNQSKTNQPQNLSQSQKKPSAQRQPNQPNQPNLFQFFGKSVLL
NPSQGSQGKLKESIIKRSNDINVDDINIQEQFEIERKIQEQYKNKQQSQQQIQPQSQQQQ
TYRQKQDPYQDSGNEIIEKLNRIGLDKNNKSTSPRHLGPDIKQSFEIQIEQQPQAKKKKG
AVNITWEKQNSKVLKPENKKQIEQEHQPEFKNDPDLLKGLTIVLSGLLNVCSRDKLEQFL
KNNGAKVTGSISGKTSYLIVADKLEDGRKGEEGNKFKEATKKGTKIVRESELNDWLIDKI
GVGMEEIFPDSNLSKLYKKSGSKKQDQPENVNLDKNLSLADKYMPKLLSDLVDNKSSVTQ
LNDWIYKFQHPNSAEEQNQKQKKRFIPLKMGRFQPVGNITSKACIISGPPGIGKTSMVRL
VAEALGLKLIVNNASDKRNKGSLRSVLNDLVDNSVLMNLFRPNKDFIIVMDEVDGMTGSD
RGGISALIECIKSTRVPIVCICNDIDNQKLKSLLAHCYSIKFQKPDAKSVAKRLKYICEQ
ENINMNLEDLEKLAICFDCDIRQSINMLELQKLQSKAKMFQPNAFKKDKVCVFNTFNAAL
SLLNRNQRRQMSLRDMLDMFFLDYDLIPLIIQDSYILSHHSDINNVAKAAELIAEGDIIS
KKIRRDQQWSLMPSFGFLSSVYPSCIVGEQMDFPKFPQWLGKNSTASKIRREGHQIKNRI
APITYLTSDIRLYSHYLFQLIKQFLELKIVRNDKDAVWSVVQIMEEYRITPDQLKEDLHD
QVFNPLKDNLLSTINAQVKTQLTKMYNKRHVILKEKAAKRQVNAERYLSENYNPLIGEEA
PLVEQSQKEIEEEENKNEEENTRGSKVKKTKKQTKKQAKKGTKKRQLDEEKSIDEDSLGS
MNNFIVDDEDEE
NT seq 2919 nt   +upstreamnt  +downstreamnt
atgagcaattcccgaaaaaggttaattcgtaattcacctgagagtaaatcaaatcataca
gaagttctttcagatattgaagaagagtataatcttaacaattataagtacgatgccaaa
agcaaaaatggttaacaaaaataaaagcagcaataataataagcttaaaaataaactcaa
taatcaatgggggaaaaataaacaccacagatttctgatgtgtttcctaattaaaattag
tccaaaactaattaaccctagaatttatcataatcataaaaaaagccatccgctcaaaga
tagcctaattaacctaattaaccaaatctattttaattttttggaaaaagtgttcttctt
aatccctcataaggttcataaggaaaattaaaagaatccataataaaacgatctaatgac
attaatgttgatgatattaatattcaagaataatttgaaatagagagaaaaatctaagaa
tagtataagaataaataacaatcttaatagcaaattcaaccataatcgtaataacaataa
acatacagacaaaaataagatccatattaggacagcggaaatgaaataattgaaaaatta
aataggataggtttggataaaaataataaaagcacatcacctagacacttaggacctgat
ataaaataaagttttgaaatccaaattgaataataaccataagctaaaaaaaagaaagga
gctgtcaacatcacatgggaaaaacaaaactcaaaagtcttaaagcctgaaaataaaaag
taaattgaataagaacatcaaccagaatttaaaaatgatccagatttacttaagggttta
acaatcgttttgagtggtttattaaatgtttgcagtagggacaaactggagtagttctta
aagaataatggagctaaggtcactggcagtatttctgggaagactagctatttaattgtg
gcagacaagttagaagatggaagaaaaggagaagaaggcaataaatttaaagaggctaca
aaaaaaggaacaaagattgtaagagaaagtgagctaaatgattggcttattgataaaata
ggtgttggaatggaagagatttttccggactcgaatttatctaaattgtacaagaaatca
ggatccaagaaataggattagccagagaatgtaaatttagataagaatcttagcttagct
gataaatacatgccaaaattattgtctgatttagttgataataaatcaagtgtaactcaa
ttgaatgattggatatacaaattctagcatccaaattcagcagaggaataaaattagaaa
tagaagaaaagatttatacccctaaaaatgggtagattctaacctgttggaaatattacg
tctaaagcatgtataataagtggtcctccaggaattggtaagacttcaatggtaagatta
gtagccgaagctttaggattgaaattaatagtaaacaatgcatcagacaagagaaacaaa
ggaagtttgagatctgtattaaatgatttggttgacaacagtgtgcttatgaatctattt
agacctaacaaggactttataattgtaatggatgaagtagatggaatgactggatcagat
agaggtggaatatcggctttaatagaatgtataaaatccactcgagttccaattgtttgt
atttgtaatgatattgacaactaaaaattaaaatcgttgttagctcattgttatagtatt
aaattttagaagccagatgcaaaatcagttgcaaaaagattaaaatacatttgtgaataa
gagaatataaatatgaatcttgaagatctcgaaaaattggctatatgctttgattgtgat
atcagataaagtattaatatgttggaattataaaaattgtaatcaaaagcaaagatgttc
taaccgaatgcattcaaaaaagataaagtctgtgtttttaatacatttaatgcagcttta
agtttactcaatagaaatcaaagaagatagatgtcactaagagatatgctggacatgttc
ttcttagattatgacttaattcctcttattatttaagacagttacattttatcgcatcat
tcagatattaataatgttgctaaagcagctgaattaatagctgaaggagatataatatca
aagaaaattcgaagagatcaacaatggtcattaatgccatcctttggattcttatcaagt
gtctatccttcgtgtattgttggggaatagatggattttccaaaattcccataatggttg
ggaaagaattcaactgccagtaaaattagaagggaaggacattaaataaaaaatagaata
gctccaattacttatttgacatcggatatcagattgtattctcactatttgttttagttg
ataaaacaatttttagaattaaaaatagttcgaaatgataaagatgctgtttggagtgta
gtttaaattatggaagaatatcgaattactcctgattaattgaaagaagatcttcatgat
taagtattcaacccattgaaggataatttattgagcactattaacgctcaagtcaaaacg
caattaacaaaaatgtataataaaagacatgtaatattaaaggaaaaagcagctaaaaga
taagtcaatgctgaaagatatttgagtgaaaattataatcctttaattggtgaagaggca
ccattagttgaatagtcttaaaaagagattgaagaagaagaaaacaaaaatgaagaagaa
aatacaagaggttcaaaagttaagaaaacaaaaaaacaaaccaaaaaataagctaaaaaa
gggacaaaaaaaagataattagatgaagagaagtcaattgatgaagattctctaggatct
atgaataattttattgttgatgatgaagatgaagaatga

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