KEGG   Paramecium tetraurelia: GSPATT00028787001
Entry
GSPATT00028787001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSPATT00028787001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptm03021]
    GSPATT00028787001
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00028787001
Transcription machinery [BR:ptm03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     GSPATT00028787001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     GSPATT00028787001
    U7-dependent histone pre-mRNA processing factors
     GSPATT00028787001
SSDB
Motif
Pfam: Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Beta_lactamase3 Lactamase_B_2 Lactamase_B_3 DUF1611 MGDG_synth
Other DBs
NCBI-GeneID: 5010934
NCBI-ProteinID: XP_001425150
Genoscope: GSPATT00028787001
UniProt: A0BGT5
LinkDB
Position
undetermined
AA seq 690 aa
MNSDNSKLIITPLGAGNEVGRSCILLQFQEKQIMFDCGIHMNKENKGVMALPYFNKIDKI
EDIDLILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQD
LINEQSIEQSLKNIDCIDYDQEIHYQGIKLKCYNAGHVLGAAMFMVEIDGVRVLYTGDYS
TEKERHLRPAQLPLEKIHVLIVEATYGDTQHETRTKREENFLKEIVSTLNGGGNVLLPVF
ATGRCHELLIILDEYWSKNPQVQQFPIYSTCTLAIKCTHIFQKHFNKLGNKYHKGENLFK
FNHINTKKHLQDILNNQKPKVVMASPGLLQSGHSKQIYEYWCKDEKNQVIITGPAVQGTI
AHQLIHNPEPDIKIRPAQISFSAHADYLQTSSFIDSLRPQHVILVHGTQHKCRDLQKKIE
INFKDIVEKVWAPENQKQVELSFQRSSVSQAGCKAIGELGNQIENFIITFQEKHNQHKID
EEIVESMADCICCSNDLYFNGVLLNTEHGFMLVDETDKETLQQYGIEQNQIYNQMYIPLQ
CSLEQVFNYVQELNPEAQFHPDDSLIVVKDLEIRVPVSSVLLQFKWISSPKTDDLADSLA
FFLSNVNQNKLNDEELLKDKQKGLIKVLQKTEFQTEIIENKLNVKNKNQVFIQVDLNTLN
PSVVAEETQENKNIIKRAQTIIESYLSSYL
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgaattcagataattctaaattaataatcacccctttaggagctggtaatgaagttggc
agatcgtgcattttgctctaattctaagagaaataaattatgtttgattgcggtattcac
atgaataaagaaaacaaaggtgttatggcattaccctattttaataaaatagataaaatc
gaggacatagatttaattctcataacacactttcatctggatcattgtggtgctcttcct
tattttctcaagaattataaatttaaagggaaaatatatatgactactccaacaaaggaa
atttatggtttggttttgaaagattccatcaaagtaaagagtgaagattttagtcaagac
ctaataaatgaataaagcattgaataatcattgaaaaatattgattgtatagattatgat
taagaaattcattactaaggaattaaattgaaatgttacaatgctggacatgtgttaggt
gctgcaatgtttatggttgaaattgatggtgttagagttctatatactggagattatagc
acagaaaaagagagacatttaagaccagcctaattgccacttgaaaaaattcatgttttg
atagttgaagcaacatacggagatacctagcatgaaactagaacaaaaagagaagaaaac
tttttgaaagaaattgtctcaaccctaaatggtggaggaaatgtactgcttcctgttttc
gctactgggagatgccatgagttgttgatcatcttagatgaatattggtccaaaaatcca
taagttcaatagtttccaatttatagcacttgtacattagccattaaatgtacacatatt
ttttagaaacattttaataaattaggaaataaatatcataaaggagaaaatctattcaaa
tttaatcatatcaatacaaagaagcatttataagatattctaaataatcaaaaaccaaag
gtagtaatggcaagtccaggattactttaatcaggacattcaaaataaatttatgaatat
tggtgtaaggatgagaagaattaagtaataattacaggtccagcagtacaagggactatt
gctcatcaattaatacataatccagagccagatatcaaaattagacctgcttaaataagc
ttttctgctcatgctgattatctccaaacttcttcatttatagattcattaagaccataa
catgttattctagttcatggaacttaacataaatgcagagatttataaaagaagattgaa
atcaattttaaggatatcgtggaaaaagtatgggcaccagaaaattaaaaataagtggaa
ctgagtttttaaagaagctctgtttcttaagccggatgtaaagcaataggagaattagga
aattagattgaaaattttataatcactttctaagaaaagcataattaacataaaattgat
gaagagattgtcgaatcaatggctgattgcatttgttgttctaatgatctctatttcaat
ggtgtgcttttgaatactgagcatggttttatgctagttgatgaaactgacaaggaaacc
ttataacagtatggcatagaataaaattaaatttataaccaaatgtatattcctttatag
tgctctcttgaataagtatttaattatgtgcaagaattgaatcctgaggctcaatttcat
ccagatgatagtttaatagttgttaaagatttagaaatcagagttcctgtttcaagtgtc
ttattgtaatttaagtggatatcctcaccaaaaactgatgatttagctgattcattagca
tttttcttaagtaatgtcaattaaaataaattgaatgatgaagaattgttaaaagataaa
caaaaaggattaataaaagtactctaaaagactgaatttcaaacagagataatagaaaat
aaactaaatgtgaaaaacaagaattaagttttcatataagttgatttaaatacattgaat
ccttcagttgttgctgaggaaactcaagaaaacaaaaatattatcaaaagagcctaaaca
attattgaatcatatttgagttcatatttatga

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