Paramecium tetraurelia: GSPATT00028835001
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Entry
GSPATT00028835001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00028835001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00028835001
03009 Ribosome biogenesis [BR:
ptm03009
]
GSPATT00028835001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSPATT00028835001
Spliceosome [BR:
ptm03041
]
Complex A
U1 snRNP components
U1 related factors
GSPATT00028835001
Complex B
GSPATT00028835001
Ribosome biogenesis [BR:
ptm03009
]
Eukaryotic type
Pre-60S particles
Helicases
GSPATT00028835001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
5010982
NCBI-ProteinID:
XP_001425198
Genoscope:
GSPATT00028835001
UniProt:
A0BGY3
LinkDB
All DBs
Position
undetermined
AA seq
472 aa
AA seq
DB search
MIHSHSRSRSRSKEKQLRPQETCQHNLQQIKKVFMDGRPNTNPEDVRQYRQTNRIFIKST
HSFVPDPILRFEDVYCFPRPLQELIVKAGFPSPTPIQAQSWSIGLTGHDLIGIAQTGSGK
TLAFLLPAIIHILAQLKQNSDPQCLIMAPTRELTHQIYEQFIKFSVGSGLKAACLFGGQE
KYIQKNQLNQHPHILIACPGRLIDLVESGCTTLKGITFLVLDEADRMLDMGFEPSIRKIV
AQTRAERQTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVLILTKEQK
EEKLREILKSLGPKKILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFK
RGDTTVLVATDVASRGLDIKDIEFVINFDMPKLIEDYVHRIGRTGRAGAQGVSISLFDSY
EDAKLAGDLVGVLRESQNEVPSELSRLANVNNQGYSNYRKWNAPSGKIQYCS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgattcattcacacagcagaagtcgcagtcgaagcaaggagaagtaactgagaccctaa
gagacatgccaacataatttgcaacaaatcaagaaggtttttatggatggtagaccaaat
accaacccagaagatgttcgacaatatcgccaaaccaataggatcttcatcaaatcaacc
cattcctttgttccggatcccatacttagattcgaggacgtatactgtttcccaagacca
ctgtaagaattaatagtgaaggctggatttccaagtccaactcctatccaagcctaaagt
tggtccattggtttgacaggccatgatctaataggaattgctcaaacgggatctggcaaa
actttggcatttctcttgccagccataatccacattttggcttagttgaaacaaaattca
gacccataatgtttgattatggctccgacaagggaacttacccactagatttatgagcaa
tttatcaagttctcagttggttctggattgaaagcagcatgtttatttggaggttaagag
aaatatatataaaaaaattaattgaattaacatcctcatatattgattgcttgtccaggc
agattgatagatttagttgaatcgggatgcactacattgaagggaattacctttttggta
ttggatgaagctgatagaatgttggatatgggatttgaaccatcaataagaaaaatagtg
gcttaaactagagctgaaagataaactatgttattttcagccacttggccaaaggaagtc
caatcattggccttagacttctgtactcaatagccaattcatatccagattgggagtctg
gatctgactagcaatagacaaatttaatagaaggtgctcatattgactaaggaataaaag
gaagaaaagctaagagaaatcctcaaatctttggggcctaaaaagatcctaatcttttgt
tagactaagatgaaatgtgattagttataactttacttgatttaagaaggtatgcgatgc
aaatcgttgcatggagacaagagacaatcagagagagacttcgtgatgaatagtttcaaa
agaggagataccacagtgttggtggcaactgatgtagcatcgagagggttagatattaag
gatattgaatttgtgattaattttgacatgcccaagttgattgaggattatgttcataga
attggcaggacaggcagagcaggagctcaaggagtatcgatttcattgtttgattcctat
gaagatgcgaaactagcaggagacttggttggagtgttaagagaatcttaaaatgaagtg
cctagtgaattatctcgtctagctaatgttaataatcaagggtactccaattatcggaag
tggaatgctccctcaggtaagatttagtattgcagttga
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