Paramecium tetraurelia: GSPATT00029349001
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Entry
GSPATT00029349001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GSPATT00029349001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptm03400
]
GSPATT00029349001
DNA repair and recombination proteins [BR:
ptm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
GSPATT00029349001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
YPEB_N
AAA_29
Motif
Other DBs
NCBI-GeneID:
5011903
NCBI-ProteinID:
XP_001426119
Genoscope:
GSPATT00029349001
UniProt:
A0BJK4
LinkDB
All DBs
Position
undetermined
AA seq
1103 aa
AA seq
DB search
MRKNGKEDDDDELFEISKKQQRKKSTNRKRSSRRLKKADDEDDDDYTPQAQKESSSSELQ
PSSEDEKQNKKRQSHTNVKSKGTRQKKQPKKTEQQPQQQQQESCQEEQQHNKGDEEFYKL
AEQTLPIFMQPEHIRDSEGRRPDEPDYNPSTIDIPNDQYQKLPPMFRQYWNAKKNHLDSM
IFFRCGRWIAVMYNDAIIVAKMFNRYLGFWGKDRPCVTVYDNQLPIYQRALLEKGHKIIM
IEQLEKADVANKEDGEVVRREITQMISRGTLQDLGDAETYEQRNLLVLVCSKAPVNLKGH
TYIYGVSIVDCTTNLFTFDQFFDDAQSNHLRSIIYNTKPVEVILCKTPPEIEKIFKNICN
PTIIIYKKSFKDCEFIFQQFKIEYMEVVKGKNDQNQKLFDGIVIPSRKEQSEQKIDIDIN
QGLYSDSKQEIREEKCVENYQLSQDYPNILIELEKQFYHEKKQQDKEDDESSFYSYYYST
QSLYLLLCYLRQLLISDSVYRRGKFNFLDSNFTHNTHLYLDSQALESLEIFNVNLQTKIT
TAGSLFDYLNRCATAPAKRLLTKWVQSPLQNYKLIIERQECVQELTNLIPKCAEFQRRIK
SLPDIERAIIKCFNTIHSHKLKAVPITGGESIGKTKLKEIKNVLSHIRQAAEAFKIFDQD
IKQLKSKKLKEILNYRQNAKILKDSLDELEKCMTMDDNEPKPVKGVSPEYDQTLDRLNEI
TDSLQDELEKWKKKLKCPEIVYTHARMKYQLEIPEKYLEGNQKPKELIITSKRQGFQRFQ
TTFIEEQLYKLRKVEDELSQKLLPFINEYFTKFYSHRKEFFQLISYLSEADCLISLALVS
NEQKVSCFPQIIQDESAKRCELIEAYHPCLLQNKDVEWVPNTIKFTGSIDTLLLTGPNMS
GKSTLLRLIGVSIILAQIGCAVPAQSFTLTPFDRIFCRLGATDRLLEGKSTFFIELEETK
TILDNCTSRSLVIIDELGRGTSTYDGVALASAVLRFLSDKTKPMTLFATHYHILLDEFAL
FKNISQCVMKHYQEKDQVVFKYKLIEGVAEKSFATNVAQIAGVPKEVIKKAKQMEAKITK
EESKINKNREILKKFNQIIKQLL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagaatgggaaagaagatgatgatgatgaattgtttgaaatatcaaagaagcaa
tagaggaagaaatcaaccaatagaaaaaggtcgtctcgtcgtttgaagaaagctgatgat
gaagatgatgatgattacacgccttaagcataaaaagaatcctcttcttctgaacttcaa
cctagttctgaagatgagaaacagaacaaaaaaaggcaatcccatactaatgtgaaatca
aagggaaccagataaaagaaacaacccaaaaaaacagaataataaccataatagtaacaa
caagaatcttgttaagaagagtaacaacataacaaaggagatgaagaattttataaatta
gctgaataaaccttgcccattttcatgcaacctgaacacattcgagattcagaagggaga
cgaccagatgaaccagattacaatccttccacaattgacatcccaaatgatcaatatcaa
aagttaccaccaatgttcaggtagtattggaatgctaagaaaaaccatttagattctatg
atattctttcgatgtggtagatggatagctgtaatgtacaacgatgccattattgttgct
aaaatgttcaatcgatacttgggattctggggaaaggatagaccctgtgtaacagtctat
gataatcaattgcccatatattaaagagcattgttggagaaaggacacaaaataataatg
attgaataattggaaaaagcagatgtggctaacaaagaggatggtgaagttgtgagaaga
gaaattacctaaatgataagtagaggcactctataagacttgggggatgcagaaacatat
gaataaaggaatctattagtattggtttgctcaaaagcacctgtcaatttaaaaggacat
acatatatttatggggtttctattgttgattgtacgaccaatctttttacatttgatcaa
ttcttcgatgatgcttaatccaatcatcttagatctattatttataatactaaacctgta
gaagtcatactgtgtaagacaccacctgaaatcgaaaagattttcaaaaatatatgtaat
cctactatcattatttacaaaaaatcattcaaagattgtgaattcatattccaataattt
aaaattgaatatatggaagtggttaaaggtaaaaatgattaaaattaaaaactatttgat
ggaattgtaattcctagtcgaaaagagtaatctgaacaaaaaatagatattgatatcaat
taaggattgtattcagattcaaaacaagagataagagaagaaaaatgtgttgagaattat
taattgagttaggattatcctaatatactaatagaattggagaaacaattttatcatgaa
aaaaagtaataagataaagaggatgatgaatctagcttttattcttattattattcaaca
taatctttgtatctcttactgtgttacttgagataactactaattagcgattcagtttac
agaagaggtaaattcaattttcttgattccaatttcactcataacactcatctttattta
gattcctaagccttagaaagcttggaaatatttaatgtgaatctacaaactaaaatcact
actgcaggtagtttgtttgattatttgaatcgatgtgctactgctcctgctaagagacta
cttactaaatgggtttagagtccattatagaactacaaactaattatagagagataggaa
tgtgtacaagaattaactaatttaatacctaaatgtgcagaatttcaaagaagaatcaaa
tcattacctgatatagaacgtgccatcattaagtgttttaatactattcattctcacaaa
ttaaaggctgtccccattactggaggtgagagtattgggaaaactaaattgaaggaaatt
aagaatgttttgagtcatattagataggctgctgaggcatttaagatctttgattaagat
ataaaataacttaaatctaaaaaattgaaggaaatcctaaattatagataaaatgctaag
attttgaaagactcacttgatgaattggaaaagtgtatgactatggatgataatgaacca
aaacctgttaagggagtaagtccagaatatgatcagacattagataggttaaatgaaatc
actgattcccttcaagatgaacttgaaaagtggaagaagaaattgaaatgtcctgaaatt
gtttacactcatgcaagaatgaaatattaattagaaatacctgagaaatatttggaaggc
aattaaaaaccaaaagaattaattatcacttccaaaagataaggatttcaaagattttag
actacattcatagaagaataattatataagttaagaaaggtagaagatgaattatcttaa
aaactactcccctttatcaatgaatacttcactaaattttattcacatagaaaagaattc
ttttaattgatctcctatctctcagaagctgactgtctaatttctttggctctggtgtcg
aatgaataaaaagtatcttgttttccataaattattcaagacgaaagtgcaaagaggtgt
gaattgattgaagcgtatcatccttgtttattataaaataaagatgttgaatgggtgcca
aacacaatcaaatttactggctctattgatactcttttacttacaggaccgaacatgagt
ggcaaatccaccttattaagattgattggtgtctctattattttagcccaaattggatgt
gctgtaccagcctaatcttttactttgactccttttgataggatcttttgtagacttgga
gccactgatagattactagaaggaaagtcaaccttctttattgaacttgaagaaactaaa
actatactagataactgcacttcacgaagtttagtcatcatagatgaattaggtagagga
acttcaacttatgatggagtagctctggcatctgctgtccttagattcctatcagataaa
actaaacctatgactttgtttgctacacattatcatatcttattagatgaatttgcattg
tttaagaatatttcataatgtgttatgaagcattattaagagaaggattaagttgttttt
aaatacaaattaattgaaggagtagcagaaaaaagttttgccaccaatgtagcataaata
gctggtgtccctaaagaggttattaaaaaagctaaacagatggaagccaagatcaccaaa
gaggaatccaagattaataagaatagagagattcttaaaaagtttaatcaaataataaaa
taactattatga
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