KEGG   Paramecium tetraurelia: GSPATT00029416001
Entry
GSPATT00029416001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00029416001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ptm03000]
    GSPATT00029416001
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00029416001
   04121 Ubiquitin system [BR:ptm04121]
    GSPATT00029416001
Enzymes [BR:ptm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     GSPATT00029416001
Transcription factors [BR:ptm03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    GSPATT00029416001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSPATT00029416001
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     GSPATT00029416001
Ubiquitin system [BR:ptm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    GSPATT00029416001
SSDB
Motif
Pfam: RRM_1 Torus Nup35_RRM_2 Myticin-prepro
Other DBs
NCBI-GeneID: 5011969
NCBI-ProteinID: XP_001426185
Genoscope: GSPATT00029416001
UniProt: A0BJS0
LinkDB
Position
undetermined
AA seq 312 aa
MKNQTNQSEICQYCNLSDCECSDQEDWDSCDSPKPKTLYSFKEINLQNKSLLAEIRIICK
NLIYVIGLAPNIAKEDQLKKLEYFGQYGQIQKLIVIQSNTFNPPSHAAYITYRNEQEASL
AILVNIINIYLQVKASFGTTKYCTNFLKGQQCKIKDCVYLHQHPKDKDSTQVLKKEEMNN
SKWLFSYSQKLAQANFKKFYTKINYKNALQKSVFPTTQNILDNMLKERVVEPIQQQQQQI
NVQWEEIKETQQQQEFPQPIQQKSIDIEKRVEAVILKMDGEGNRNSRFKFTNSENVPQDY
EAIQQIKQYLQK
NT seq 939 nt   +upstreamnt  +downstreamnt
atgaaaaattaaaccaattaatcggagatttgccaatattgcaatttgagtgactgtgaa
tgttcggaccaagaggattgggacagttgtgattcacctaaaccaaaaacactatattct
ttcaaagaaatcaatctacaaaacaaatcattattagctgaaatcagaatcatttgcaag
aatttgatctatgtgattggtttagcacccaacattgccaaagaagatcaattgaaaaag
ctggaatatttcggtcaatacggataaatctaaaaattaattgtgatccaaagcaacacc
ttcaatcccccctctcatgctgcttatattacttatcgaaatgaataagaagcatcttta
gcaatcttagtaaatataattaatatttatttacaagtaaaggcttccttcggaaccacc
aaatattgcacaaacttcttaaagggtcagcaatgtaagatcaaggattgtgtatacttg
catcaacaccccaaagacaaagactccacacaagtgttaaaaaaagaagaaatgaataac
tcaaagtggttattttcatattcataaaaactagctcaagccaacttcaaaaagttttac
actaaaatcaattacaaaaatgccctacaaaaatcagtgttcccaaccacataaaatatt
ttagataatatgttaaaagaaagagtcgttgaacccatttaacaataataacaataaata
aatgtgtaatgggaagaaataaaagaaacataataataataagaattcccataacccatt
tagtaaaagtccatcgacattgaaaaaagagttgaagcggtcattctcaaaatggatgga
gagggcaatagaaactcgagattcaaatttacaaatagtgaaaatgtcccataagattat
gaggcaatataataaataaaataatatctacaaaaatga

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