KEGG   Paramecium tetraurelia: GSPATT00029687001
Entry
GSPATT00029687001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03040  Spliceosome
ptm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00029687001
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    GSPATT00029687001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ptm03041]
    GSPATT00029687001
   04121 Ubiquitin system [BR:ptm04121]
    GSPATT00029687001
   03400 DNA repair and recombination proteins [BR:ptm03400]
    GSPATT00029687001
Enzymes [BR:ptm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     GSPATT00029687001
Spliceosome [BR:ptm03041]
 Complex B
  Other components
   Prp19 complex
    GSPATT00029687001
 Complex C
   Prp19-CDC5 complex
    GSPATT00029687001
Ubiquitin system [BR:ptm04121]
 Ubiquitin ligases (E3)
  U-box type E3
   GSPATT00029687001
DNA repair and recombination proteins [BR:ptm03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    GSPATT00029687001
SSDB
Motif
Pfam: WD40_Prp19 Prp19 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_EML_2 WD40 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd WDR55 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st zf-Nse Beta-prop_HPS5 U-box Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_WDR41 B-prop_COPA_B_2nd NBCH_WD40 Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_CAF1B_HIR1 Tricorn_2nd WDR54 Rtf2
Other DBs
NCBI-GeneID: 5012238
NCBI-ProteinID: XP_001426454
Genoscope: GSPATT00029687001
UniProt: A0BKI9
LinkDB
Position
undetermined
AA seq 486 aa
MQSWQTCALSGELIETPVISKVSGHIYEKRLIEKHIESTGTCPITGRPLNFDDLIEVKVA
KVQKPRPVTATSIPSLLSLLQNEWDALLLEQFQLKQHLEQVRHELTHALYQHDAACRVIA
KLIKERDQARIELAQLQNKLNHKVEVETNDVTEKLSANYVTDIEQTALKLTSQRKLLRKQ
QSYFEQFPSPQILSNYEIKQQHTQTQGGTSLDIQANYVIVGGQAGLVSLYRSETLLYKNQ
QSNQRINTIKFFTTDEHLRFVSSTSDGDLVIYQFNTETNEGVVTQTVKVGQNITGLAIHP
LGYIAIIVTSGGLLLLYDLRSGQQISRVTDFEGQCQFTSVGIHPDGLLLAIGQENSQIKI
WKITSGQLVAQFEGQEGSISQVAFSENGVNLASVSSTEVFQWDLRNPGQFQKLFQSQNIS
SISYDTSGAYLAVGENKNIHLFDIKKQQEFFKFESHRDVVTAIKFAEFNKNIYSCSFDKQ
VNIYGN
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgtaatcctggtaaacttgtgcattatctggtgaattaatagaaaccccagtaatatcc
aaagtgagtggacatatctacgaaaaaagattgattgaaaaacatattgaaagcacaggc
acatgtccaataacaggaagacctttgaattttgatgatctgatagaggtgaaagtggcc
aaagtgtaaaaacccagaccagtgactgctacctcaataccttcattgctttccctttta
caaaacgaatgggatgctttgttgttggaacaattctaattgaaatagcatttggaataa
gtaagacacgaattaacacatgccttatattaacatgatgctgcatgtcgtgtgatagca
aagctaataaaagagagagatcaagcaagaatagaattagcgcaattacaaaataaatta
aatcataaagtagaagtagaaaccaatgatgttactgaaaagttatcagcaaattatgtg
actgatatagaataaaccgcgttaaaattaacaagccaaagaaaattattaagaaagcaa
taatcatattttgaatagtttcctagtccttagattttgtcaaattatgagatcaagtaa
taacacacttaaacttaaggtggcacttcattagatatctaagcaaattatgtgatagta
ggaggataagcaggtttagtttcactgtatcgttccgaaacattgttgtataagaatcaa
taaagcaatcagcgaataaatacaattaaattttttacaactgatgaacatttaagattt
gtttcatcaacttcagatggagacttggtcatttattaatttaacaccgaaactaatgag
ggagtagtaacctaaacagtgaaagtaggacagaatatcactggattagctattcatcct
cttggctacattgctattattgtgacatctggaggtcttttgttgttatatgatttaaga
tctggttaataaattagtagagtaactgattttgaaggataatgttaatttacatctgtt
ggtatacatccagatgggttgttattagcaattggataagaaaattcatagattaaaatt
tggaagattacatctggctaattggttgcttaatttgaaggataagaaggatctataagt
taggttgcattttctgagaatggagttaatttggcatcagtatcatcaactgaagtgttt
taatgggacttaagaaatccgggttaattctaaaagttgtttcaatcataaaacataagc
agtatttcttatgatacatcaggagcttacttggctgtaggtgaaaataaaaatatacac
ttgtttgacatcaaaaagtaataagaattcttcaaattcgaaagtcatagagatgttgta
actgcgataaaatttgccgaatttaataaaaatatatacagttgtagttttgataaacaa
gtaaacatctatggtaattga

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