Paramecium tetraurelia: GSPATT00029794001
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Entry
GSPATT00029794001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03013
Nucleocytoplasmic transport
ptm03015
mRNA surveillance pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00029794001
09122 Translation
03013 Nucleocytoplasmic transport
GSPATT00029794001
03015 mRNA surveillance pathway
GSPATT00029794001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00029794001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00029794001
03009 Ribosome biogenesis [BR:
ptm03009
]
GSPATT00029794001
03012 Translation factors [BR:
ptm03012
]
GSPATT00029794001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSPATT00029794001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GSPATT00029794001
mRNA cycle factors
Stress granule specific factors
GSPATT00029794001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
EJC/TREX
GSPATT00029794001
Ribosome biogenesis [BR:
ptm03009
]
Eukaryotic type
90S particles
Helicases
GSPATT00029794001
Translation factors [BR:
ptm03012
]
Eukaryotic type
Initiation factors
eIF-4
GSPATT00029794001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
SLFN-g3_helicase
CMS1
Utp25_C
AAA_30
AAA_19
UvrD-helicase
PhoH
AAA_22
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
5012345
NCBI-ProteinID:
XP_001426561
Genoscope:
GSPATT00029794001
UniProt:
A0BKU6
LinkDB
All DBs
Position
undetermined
AA seq
395 aa
AA seq
DB search
MDKHNLQENVEYETSEQITIYPTFESMSLREELLRGIYAFGFNKPSAVQQRAIVPVIQGR
DVIVQSQSGTGKTAVFSLSALSMIDLSIREPQVLILSNTRELAEQSAKVAMALGDFLNVS
IHACIGGHSIQDDISKLQHGVQIVSGTPGRVFDMIQRKELRVRHLKMLILDEADEMLTKG
FKQQVYDIYRYLPPTTQNVVVSATLPQEILDMTDKFMNNPLKILVKRDELTLEGIKQFFI
QVDKEEWKFDTLCDLYDTLTITQAVIFCSTINKCEWLANKMREHEFTVVQMNGKMSQKER
DKIMAEFRQGNKRVLIATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGV
AINFVKQEDVRLLRDIEQYYSTQIDEMPMNVTDLL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggataagcacaatttataagagaatgtagagtatgaaacttcagaataaataactatt
tatcctacttttgaatctatgtcattgagggaagaacttttaagaggcatctatgctttt
ggttttaataaaccttcagcagtgtaacaaagagcaattgttcctgtaatataaggaaga
gacgttatagtatagagtcagagtggtactggtaagactgcagtatttagtttgtcagct
ttgtcgatgatagatttatctattagggaaccttaagtattgattttatcgaatacaaga
gagctggcagaacaaagtgcaaaagtggctatggctttaggagattttcttaatgtttca
attcatgcttgtattggtggacattctatttaagatgatatcagcaaactgtagcatgga
gtatagatagtatccggtactccaggcagagtatttgatatgatatagaggaaagaatta
agagttcgccatttaaaaatgttgattcttgatgaagctgacgaaatgttaactaaagga
ttcaaataataagtttatgatatctatagatatttaccaccaacaacttagaatgtggta
gtatcagcaaccttgcctcaagaaatacttgatatgacagacaaattcatgaacaatccc
cttaagatattagtgaaaagagatgaattgacattagaaggaattaaacaattctttatt
taagtggataaagaagaatggaagttcgatactttatgtgatttatatgataccctaact
atcacttaagcagttatcttttgttctaccattaataagtgcgaatggttagcaaataag
atgagagaacatgaatttactgtggtctagatgaacggaaaaatgtcttaaaaggaaaga
gataaaattatggccgaatttagataaggaaataagagagttttgattgctactgatgtt
tggggaagaggtcttgacgttcaataagtatccttagtaatcaattatgatttaccaaac
tctagagaattgtacatccacagaattggtaggtctggcagatttggaagaaagggtgtt
gccatcaattttgttaaataagaagacgtcagacttctgagagatattgaataatattat
tcaacacaaattgatgaaatgcctatgaatgtgacagatttattatga
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