Paramecium tetraurelia: GSPATT00031563001
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Entry
GSPATT00031563001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00031563001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00031563001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
GSPATT00031563001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
5014514
NCBI-ProteinID:
XP_001428730
Genoscope:
GSPATT00031563001
UniProt:
A0BS15
LinkDB
All DBs
Position
undetermined
AA seq
669 aa
AA seq
DB search
MQTHAKQVVGLINQLPKKDELKFLEKQPGNKKVISETNQAFISVINGLRSLIGDVQTNST
TIPFKQIEETLDQFLENAAIQYDKMNKLSIAPKQPQVQKTNQAKPKDIYGFADVIQLNKL
PFIPVLKYKHYAQTELDQKIIEAQNNPTLFFEKYAIEEFTHPYYEEITRLTPQDFVLDVP
PKINRYRDLEPPIMINNADNLGELVLKIQNEVDQNGFSEIAVDLEHNHSISYLGVTCLIQ
LSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGADNDVQWLQRDFGLYIVNLFDT
FQASKELLLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLSDEMIKYAQIDTHYLLYIYD
RMRQDLKKLNKPNENLNNVPNYYIESVLKRSKDTALKIYKKPLQDQDQSLQTILNKQDRR
MEAKNFDLMVKLLELREELGIQYDQNPRYFLPNPFLFKLVESKPTSIQELKSQLGGDKYI
HEIIKENLWQFLKILLEFDEKVPIVNVIQEEQINTTQIQIEEMRPSIQVEPLKIVQISVN
IKKFDNQNKSVVKNHFRNENVDQIKSLFLCESPFKLLNVFYDGLGSQIFQSSEGIKFIAK
QQKIEKINTGDFIQLPKLEEQNRDQQKDQDVRLNNTLQNQYGTKILKRHQKIEQQKIQKS
NISNRFEIP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtaaactcacgcaaaataagtggttggattaatcaatcaattgcctaaaaaagatgag
ttgaaattcttagaaaaacaaccaggaaacaaaaaggttatttcagaaactaatcaagcc
ttcatctcagtcatcaatggattgcgatctctgatcggagatgtctaaactaattcaaca
actatcccatttaaataaatagaagaaacattggattaattcttagaaaatgcagccatt
caatatgacaaaatgaataaattaagtatagctccaaaacaaccccaagtttaaaaaact
aattaagctaaaccaaaagatatttatggatttgctgatgtaatctaactcaataaatta
ccttttattcctgttttaaaatataagcattatgcttaaacagaattagattaaaaaata
atagaagcctaaaataacccaactttattttttgaaaaatatgccattgaagaatttaca
cacccttactatgaagaaataacaaggttgacaccacaagattttgtacttgatgtacct
cccaaaattaatagatatcgagatttagaacctcccatcatgattaataatgctgataat
ttgggggaacttgtccttaaaatataaaatgaagtggattagaatggttttagtgagatt
gctgtagatttggaacataatcattcaatatcttatttgggagtgacctgcttgatccaa
ttaagcacaagaactcaagattacataattgatccttttcctctatggaaataactagga
gacatgttaagtgttgtctttacgaaccccagaatagtaaaggtttttcatggagctgat
aatgatgtacaatggctgtaaagagattttggtttatatattgtaaatctattcgataca
ttccaagcctcaaaggagttattgcttatgtaaaattccttttagtttctgctctcagaa
tattgtaagaaatctacagataaaacatattaaactgcagattggacataaagaccatta
tctgatgaaatgattaaatatgcttagattgacacacattatttactttacatctatgac
agaatgagataagatctgaagaagttaaataaaccaaacgagaatctaaataatgttcca
aattattatattgaaagtgtattaaaaagaagtaaggacacagctctcaagatttacaag
aaacctttataagattaagattaatccttgcaaacaattcttaataaacaagacagaaga
atggaagcaaaaaattttgatttaatggttaaattattagaattaagagaagaattaggg
atttaatatgatcaaaatccaagatactttttgcccaatccattcttattcaaactggtt
gaatctaagcctacctcaatctaagaattaaaaagccaattgggaggtgataagtatatt
cacgaaattatcaaagaaaatctctggtaatttttaaagatattgttggaattcgatgag
aaagttccgatagtcaatgtcatataggaagaataaataaatacaacatagatataaatt
gaggaaatgcgacctagtatctaggttgaaccattaaaaattgtctagatctcagttaac
attaagaaatttgacaatcaaaataaaagtgttgtcaaaaatcattttagaaatgaaaat
gttgattaaataaaatcgctattcctttgtgaatctcctttcaagttgttaaatgtattt
tatgatggactgggttcttaaatattctaatcgagtgaaggaataaagtttatagcaaaa
caataaaaaatagaaaagattaatacgggcgatttcatatagcttccaaaattagaagaa
taaaatagagattaatagaaggattaggatgttagattaaataacacactttaaaatcaa
tatggcactaaaattctaaaaaggcattaaaaaatagaataatagaaaatataaaaatct
aacataagcaacagatttgaaattccatga
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