Paramecium tetraurelia: GSPATT00033624001
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Entry
GSPATT00033624001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00033624001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00033624001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00033624001
Spliceosome [BR:
ptm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GSPATT00033624001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
AAA_22
DEAD
AAA_19
SRP54
AAA_30
T2SSE
DUF2387
AAA_7
TsaE
nSTAND_NTPase5
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
5016953
NCBI-ProteinID:
XP_001431169
Genoscope:
GSPATT00033624001
UniProt:
A0BZ04
LinkDB
All DBs
Position
undetermined
AA seq
1006 aa
AA seq
DB search
MSKLDDFWLRDKMYDLLGLYDNITHDFIKECAKSSTSATELKKKLIDSSFPAEDEFCEEL
LARFAGIKPPKPSEYELWEKEQQEKKQKEYELVEANKAQQLQVHNPNENKEEDKKAKEEL
HQKLLKKKPLDRQQEELLKKIELEKVKDESRMKYLKERELKQLKLKQMIQKDEEQIFDEA
ELTKKEKEERELNQLILKAAETQKDNDIVVEYYKQPDLYEEDGKILKDKTDVLKKKATDI
KAEKPEEEQWQQHISTRANQHVRTWDEIEQKRIKKYELLYENAIDFVQLEVIKELGKIQN
EKAKKKEGKREEEKERQEERQEEEETSKFQQHSSEEEQPKPQYPMEPQKPQKSAIQIVKE
GLPIFKFRTQLLSLIRDNKVIVMVGETGSGKTTQLAQYLHEVGYTRTGMIGCTQPRRVAA
MSVASRVALEMGVKLGHEVGYSIRFEDCCNDSTIIKYMTDGMLLREFMIDPMLQKYSVLI
IDEAHERTLHTDILLSLIKDISRARDDLKVVISSATLDAQKFSQYFDDAPIIQIPGRRYQ
VDIYYTQQPEGNYVEAAVVTVLQIHVTQGVGDILVFLTGQDEIEDAEEMLRTRTKGFSKK
IPELIICPVYAALPSEQQVKIFEPTPKGCRKVVLATNIAETSITIDNIIYVVDCGYVKQT
SFSPSTGIESLQVVPCSKANANQRAGRAGRIAPGKCFRLYTAWSYNNELEDSPIPEIQRT
NLGNVVLLLKTMGINNLVNFDYMDAPPHEMLLRALEQLYSLGALNNEGELTKLGRRMAEF
PLDPMLSKMVVTSEHFKCVDQIITISAMLSVGNTIFYRPKEKQVHADTAKKNFYRPGGDH
MTLLNIYNQWKDCNYTKEFCYESFIQFKAMKRAQDIKEQLTSLCERVEIDIKDETLSVYE
DGGINIRKCITSGFFYNSAKKQKSETYRTLKNSHETQIHPSSLVFQEKPEWVIYHELVLT
TKEYMRNVCEIKPEWLYEIAPHYFTEDFIKSNQKTLPKAKIDYNQF
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaattggatgacttttggttgagagacaagatgtacgatctcttgggtctgtat
gataatatcacgcatgattttattaaagaatgtgcaaaatcctcaacaagtgcaacggag
ttgaaaaagaaattgattgattcaagttttcctgccgaagacgaattttgcgaagagttg
ctagccagatttgcaggaatcaaacctcccaagccttcagaatatgaattgtgggagaag
gagtaataggaaaaaaagtagaaggagtacgaattagtagaagcaaataaggcttaacaa
ttataagttcataatcccaatgagaataaagaggaggacaagaaggccaaggaggagttg
cattaaaaattattaaaaaagaaacccttggatagatagtaggaagaactgttgaagaag
attgaattggagaaagtgaaggatgaatccaggatgaagtatttgaaggaaagagaattg
aaatagttgaaattgaagcaaatgatttagaaggacgaggaacaaatattcgatgaggca
gaattgacaaagaaggaaaaagaggagagagagttgaattaattaatattgaaggcagca
gagactcagaaagacaatgacatagtggttgaatattataaatagccagatttatatgag
gaggacggtaaaatattgaaagataaaactgatgtcttgaaaaagaaagctacagacatt
aaagctgaaaagcctgaagaggaacaatggcaatagcacatatctacaagagctaattaa
catgtgagaacatgggatgaaattgagtaaaagagaattaagaagtacgaattattgtat
gaaaacgcaatagacttcgtttaattagaagtaatcaaggaattgggaaaaatttaaaat
gaaaaagcaaaaaagaaagaaggaaaaagagaagaagaaaaagaaagataagaagaaaga
taagaagaagaagaaacatcgaagttctagcagcattcaagtgaagaggagtaacctaag
ccttaatatccgatggaaccttagaagccttaaaaaagtgcaattcagattgtcaaagaa
ggattgccaatctttaaattcagaactcaactattatcgttgattagggacaacaaagtc
attgttatggttggagaaacaggatcaggaaagactacacaattggcataatacttacat
gaggttggttacacgagaacaggaatgattggatgtacttagccaaggagagtggctgct
atgtcagtggcatctcgagtggcattagaaatgggtgtgaaattgggacatgaagtaggt
tattcaattagatttgaagattgttgtaatgattctaccatcatcaaatacatgacagat
ggtatgttattgagagaattcatgattgacccaatgctatagaaatatagtgtattaatt
attgatgaagctcacgaaagaaccttacatactgatatcttgttgagtttaattaaggat
ataagcagagctagggatgatctcaaggtagttatctcttcagccacacttgatgcatag
aaatttagttaatatttcgatgatgcccccatcattcagataccaggcaggagatattaa
gtagatatatattacacacaataaccagaaggcaattatgttgaagcagctgtcgttact
gttcttcaaattcatgtcacctaaggtgtgggtgatatcttagtgttcctgactggacag
gatgaaattgaagatgctgaagaaatgcttagaacaagaacaaaaggattctccaaaaaa
atacctgaactaattatttgtcctgtttatgctgccttacccagtgaataataagtcaaa
atatttgaacctactcctaaaggttgtcgaaaagtagtcttggctactaatatagctgaa
accagtatcactattgacaatatcatttatgttgttgattgtggatatgttaagcaaaca
tcttttagtccatccacaggtattgaatcattacaggttgtaccatgttctaaggctaat
gctaatcaaagagcaggcagagcaggtcgtatagcaccaggaaagtgctttagactttat
actgcatggtcctataataatgaattagaagactcacccatccctgaaatccaaagaacc
aatcttggtaatgttgttttattactcaaaactatgggtatcaataatttggttaatttc
gattacatggatgctccacctcatgaaatgttattaagggctttggaataattatattca
ttgggagcattgaataacgaaggtgaattgactaaattaggaagaagaatggctgaattt
ccattagatcctatgctttcaaagatggttgttacatctgagcattttaaatgtgtagat
tagattatcaccatttctgccatgctttctgttggaaatactatcttttatcgtccaaaa
gaaaagcaagttcatgctgatacagcaaaaaagaacttttatagaccaggtggagatcat
atgactttattgaatatctacaattaatggaaggattgtaattatactaaagagttctgt
tatgaaagctttatccaattcaaagcaatgaaaagggcacaagacattaaagaataattg
acttccttgtgtgagagagtggagatcgatattaaggatgaaactctgtctgtttacgaa
gatggtggtatcaatataagaaaatgcatcacttctggattcttttacaattcagctaaa
aaataaaagagtgagacctatagaacactcaagaatagtcatgaaacataaattcatccc
tcctctttagtattccaagaaaaaccagagtgggtaatttatcatgaattagtgttaact
actaaggagtatatgaggaatgtatgtgaaatcaaaccggaatggctttatgaaatagca
cctcattattttacagaagactttattaaatcaaattaaaaaacattgcccaaagcaaaa
attgattataatcaattttga
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integrated database retrieval system
