Paramecium tetraurelia: GSPATT00037251001 Help Entry GSPATT00037251001 CDS       T01055                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism ptm  Paramecium tetraurelia Pathway ptm03013   Nucleocytoplasmic transport ptm03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:ptm00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     GSPATT00037251001    03015 mRNA surveillance pathway     GSPATT00037251001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ptm03019]     GSPATT00037251001 Enzymes [BR:ptm01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      GSPATT00037251001     5.6.2.5  RNA 5'-3' helicase      GSPATT00037251001 Messenger RNA biogenesis [BR:ptm03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      GSPATT00037251001    mRNA cycle factors     Common to processing body (P body) and stress granule      GSPATT00037251001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 AAA_11 UPF1_Zn_bind UPF1_1B_dom AAA_19 AAA_30 ResIII DEAD SLFN-g3_helicase NPHP3_N Helicase_RecD Viral_helicase1 AAA_22 Flavi_DEAD SNF2-rel_dom nSTAND3 AAA_16 RNA_helicase PhoH AAA Motif Other DBs NCBI-GeneID:  5021648 NCBI-ProteinID:  XP_001435863 Genoscope:  GSPATT00037251001 UniProt:  A0CCE9 LinkDB All DBs Position undetermined AA seq 928 aa AA seqDB search MTEIFDKVKRPTEQQIQVADYSCEYCLQSDVNAVAQCLQCKRWYCNCATKSGSHIILHLI KSKHSQISLHEQNKVQITTIECYICEQKNMFTLGQVNVRVDEEENILILCRGCLPLKQSD KITWDSNDYEPLIRDKCIKEWLLGQGEKLNSRMVTLERINQYEEERKQKPQLKFEDFDRK GPNQQLKEVQLRYRDANHYQQVFSPLVKLEEEQDKQVKEGQVLQSVKVKWDLSLKKKRLA YFLYGGREEFDTNTLQGSEMQLSLKSGNSIWQSKGTVVKVINNEEICLELHQNDPPPNNT DEGYTVECIWVSTTFKRMQIGLKTFNLNESSTSNYIYKMILGRIDTLAPPTKVENIPQKL SAPNLPDLNVYQADAVKKALKSPLSLIQGPPGTGKTVTSATIVHQLVKALEKQKQRGQIL VCAPSNIVVDQLAEKINKTGVKVVRLCSKTRESVSTTIEFLTLHNQVRSLDIPQYHQLQM FYELMDQQGELDQKDEQVFIRMRDEAEKEIIEQADVICTTCIGSADKRLKDMRFPFVLID EATQAIEPECLLPMIKGAQHVILVGDHRQLGPVVQSREAASVGLDRSLFERLVQLGIRPV RLQVQYRMHPELTVFPSNTFYEGTLQNGVTISDRTHSGNFPWPNKQKPMIFINVQGQEQL SASGTSYLNTQEAVAVEQAVYYLYQNTVKLNKIGIITPYKGQRTYIISYLQRNGQLPYNQ YRDIEVASVDGFQGREKDFIIISCVRSNDTQGIGFLTNPRRLNVTITRARFGLIIIGNAR VLCKDNLWNNMLNHFKDLDLLMEGSLPNLKPSSMKFRPPQKFIPERRNNTMNGANDEKSV YSYAQTDNLNQFDHDLGDFPLTKGIRNSEFGFNFIPDTQAFVKVADQNEIRKNQDLKEID QTNVINVGQYPSSIMQIGTFQNDLQLDV NT seq 2787 nt NT seq  +upstreamnt  +downstreamnt atgacagaaatattcgataaagtaaaaaggccaacagagcaacaaattcaggtagcggat tattcttgcgaatattgtttataatcggatgttaatgcagtggcacagtgtttataatgc aaaagatggtattgcaattgtgcgaccaaaagtggatctcacataatccttcatttgatt aagagcaagcacagttaaattagtttgcatgagcagaacaaggtgcaaatcacgacgata gagtgctacatttgcgagtagaagaacatgttcactcttggataagttaatgttagggtg gatgaagaggagaacatcttgattctgtgtcgaggatgcctcccactgaaacagtccgac aaaattacttgggactcaaatgattatgagccgctcatcagggacaagtgcattaaggaa tggttgttgggacaaggagaaaaattgaattcccggatggttaccttggaacgtataaat cagtacgaggaggaaaggaagcaaaagccataattaaaattcgaagatttcgatcgaaag ggtccaaaccaataattgaaagaggtgcaattgagatacagagatgccaatcactattag caagtattttctccgttggtgaaattggaagaagaataagacaagcaagttaaggaaggt caggtgttgcagagtgtgaaggtgaaatgggatttgagtttgaagaaaaagagattggct tacttcttgtatggaggcagagaagaattcgacacaaacactctttaaggaagtgaaatg caattaagtttaaaatctggaaattccatttggcaatccaagggaactgtggttaaagtt attaataatgaggaaatctgtttggaattacatcagaatgatccccctcccaataataca gatgagggttacactgtagaatgcatatgggtgtcaactacatttaaaagaatgtaaatt ggattaaagactttcaatttaaatgagagttcaactagcaattacatttataagatgatt ttgggtagaatagatactttggctcctccaactaaagtggagaatattccacaaaagtta tctgctcccaacctcccagatttgaatgtttattaagcagatgcagttaagaaggctttg aaatctcccttgtcattaatacaaggacccccaggaactggtaagactgtcaccagtgcc accattgttcatcaattagtaaaggcattggagaagcagaagtaaagaggatagattttg gtttgtgcaccaagtaacattgtcgttgactaattggctgagaaaattaacaaaactgga gtgaaggttgtcagactctgtagtaaaacaagagagagtgtgagtacgactattgaattt ctgacattacataattaagtgagaagtttggatatcccataatatcaccaattatagatg ttttatgaattgatggattagcaaggagagttagattaaaaggatgaataagtgttcata agaatgagggatgaggcagagaaggaaatcattgaataggctgatgtcatttgtactaca tgcatagggtcagctgataaaagactcaaagacatgagattcccatttgttttaattgat gaagcaacttaagcaatagaaccagagtgtttattacccatgataaagggagctcaacat gtgatcttggttggagatcataggcaattgggtccagtggtgtaaagtcgagaagcagct tcagtaggtttggacaggagtttatttgaaaggttggtgcagttggggataagacctgtt agattgtaggtttaatatcgtatgcatcctgaactaacagtcttcccctcaaatacattc tatgaaggcacactatagaacggagtcaccataagcgataggactcattctggcaatttc ccttggccaaacaagtagaaacccatgatattcatcaatgtgtaaggacaggaacaactg tcagcctcaggcacttcgtatctgaacactcaagaggctgttgctgttgaacaagcagtt tattatctatactagaacacagtcaaattgaacaagatcggaatcatcactccttacaaa ggacaacgcacatatataatttcctatctccaaaggaatggacaactcccgtataatcaa tacagagacattgaggttgcttcagtggatggtttccaaggtagagagaaggatttcatt attatctcatgtgtccgttcaaatgacactcaaggcataggtttcttgacgaatcctagg agattgaatgtcacaatcaccagagctaggtttggattgataatcatagggaatgcgaga gtattgtgcaaagacaatctttggaacaatatgttgaatcactttaaggatctggacttg ttgatggagggttcattgcccaatcttaaaccaagttctatgaaatttaggccgccttaa aagttcattccagaacgacgtaataacactatgaatggagccaatgacgaaaagagtgtt tattcatatgcatagacagataacctaaattaatttgaccatgatttgggtgatttccca ttaaccaagggaatcaggaacagtgaatttggattcaattttataccagacactcaagct ttcgtcaaggtggctgattagaatgaaatcagaaaaaaccaagatttaaaagagattgat taaaccaatgtaattaatgttggataatacccttcgtcgatcatgtaaattggaacattc taaaatgatttacaattggatgtctga

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