KEGG   Paramecium tetraurelia: GSPATT00037851001
Entry
GSPATT00037851001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00037851001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ptm03041]
    GSPATT00037851001
Spliceosome [BR:ptm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    GSPATT00037851001
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I PRP4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_SPT8 Beta-prop_IFT140_2nd NBCH_WD40 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 5022594
NCBI-ProteinID: XP_001436809
Genoscope: GSPATT00037851001
UniProt: A0CF45
LinkDB
Position
undetermined
AA seq 503 aa
MNLQQQERQRVTDNLSQISQLSTRAPTVINQQQESLPFISYTTENVDRQQKQQEENERKQ
KLMAEARKLMVPTQESQIKSQLRQLGQPVTYFGESAADRRQRLRTLLTEHLMQYGRLPQF
FKQQNNHNMGNLENEYFLYEGLEQLRAARIEIAKLSLHNAALRVEKLRLRRLTVDALQED
QEVLEELQKVNHFAIQMSQFGDSSGISRSTISPNQKYLATAGGSGECKLWDIETASLKSS
LLGHLTKCHSIAFHPQSLLTLSPQSFANVATASADLSIRLWTLDLDQPEVENLGILQKSI
VLKGHEDRINKVIFHQDGKRLISMGFDKTWRLWDIETQTELMVQTGHSRGIYSGALHPDG
SLLFTGDLGGFGMAWDLRIGKGILPFVGHVKGILASDFSMNGSHLATGGDDNFIRVWDIR
RRNVIEKIPAHIKLVSDLKFQPIYSKFLISASYDGNIKFWNSRDWSLHSVYETSDTKHTS
VCITNDIKTMISTGLDRKFVIWQ
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgaatttataataataagaaagacaaagagtcacagacaacctaagttaaatatcttaa
ttgagcaccagagcacctacagttataaatcagcaataggaatcactgccatttatatcc
tatacaactgaaaatgtggatagacaataaaagtaataggaagaaaatgaaagaaaataa
aaactaatggccgaagcacgcaaattaatggtgcccactcaagaaagctaaatcaaatca
caattaagataattaggctaaccagtaacttattttggagaaagtgcagctgatagaaga
tagcgtctacgtacattgttaacagaacatttgatgtaatacggtagattgccttaattt
tttaaacaatagaacaatcacaatatgggcaatttagaaaatgaatatttcttatacgaa
ggactcgaataattaagagctgccagaatcgaaatagccaaactgtctcttcataatgca
gcgctcagagttgaaaaactaagactcagaagattaactgtggatgctttgcaagaagat
caagaagtcttggaagaattgcaaaaagtaaatcactttgcaatttaaatgtcccaattc
ggggattcttctggcatctctagatcaaccattagtccaaattaaaaatatcttgcaact
gctggtggatctggagaatgcaaattatgggacattgaaactgcttcacttaagtctagt
ttgttgggacatctaaccaaatgtcattctattgcatttcatccccaatccttattgaca
ttatctccctaatcttttgctaatgttgctactgcttcagctgatctctctatcagattg
tggactctggatttggattagccagaagttgaaaatttaggaatcctataaaaatcaatt
gttttgaagggacatgaagacagaattaacaaagtgatatttcattaagatggcaaaaga
ttaatcagtatgggttttgataagacatggagattgtgggatattgaaacttaaactgaa
ttaatggtataaactggacattccaggggaatctattcaggagccttgcatccagatggt
tcattattatttacaggagatttgggaggatttggaatggcatgggatttgaggataggc
aaaggcattttgccatttgtaggtcatgtcaaaggaatattagctagtgattttagtatg
aatggttctcatcttgcaactggaggagatgataatttcataagggtttgggatatcaga
agaagaaacgtaattgaaaagatacctgcacatatcaaattagtgagcgatctgaaattt
tagcctatttatagtaaattcttaattagtgcttcttatgatggaaatattaagttttgg
aattcaagagattggagtttgcactctgtttatgagacatcagatacaaaacatacttct
gtctgtataacgaatgacataaagactatgatttctacaggtttagacagaaaatttgtt
atttggtaatga

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