Paramecium tetraurelia: PTMB.400c
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Entry
PTMB.400c CDS
T01055
Name
(RefSeq) Nucleolar RNA helicase II
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ptm
Paramecium tetraurelia
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptm03009
]
PTMB.400c
03036 Chromosome and associated proteins [BR:
ptm03036
]
PTMB.400c
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTMB.400c
Ribosome biogenesis [BR:
ptm03009
]
Eukaryotic type
Pre-60S particles
Helicases
PTMB.400c
Chromosome and associated proteins [BR:
ptm03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
PTMB.400c
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
RRM_1
CMS1
SWI2_SNF2
UMPH-1
AAA_22
RRM_7
Motif
Other DBs
NCBI-GeneID:
2898554
NCBI-ProteinID:
XP_001347224
UniProt:
Q6BFH3
LinkDB
All DBs
Position
MT
AA seq
664 aa
AA seq
DB search
MLTRRKSSELIEPEIVKKVKGIDESNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIY
NGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKNPYVLVLLPTRELAIQVTTEFNTI
LHKENEYRIYSIYGGTDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDE
ADQMLNFGFQENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHE
TQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAET
QPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKDIESYIHR
SGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAPQHQDIIKASSRDLQTSLQ
VVSKEIVDMFQPVAQEIISRCDPVEALARALACVSGYKDKLQNRSMLGSFEGYITYVLRS
STPFQACGYIWKFLKNNFSEQICNSIKGMKKIRNENGVAFDISEDVKEEFENQYQEISQN
GYCRGIEIEQATSLPDIIEEQFQSHQNYHQQPTVQVSQTVKKEQEIFIGGLDFKITEDEI
KNEFKNRGVELFNLRLLRGQDGQSKGSAFGVCRTKEMVSVAIKQNGTKFRGRNVRVNMAN
EKPK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaagaagaaaaagttctgaattaattgaaccagagattgttaaaaaggtcaaa
ggaatcgatgagagcaacttgaaagcatatataaaaaacaagcaaacaagaaaagtttta
gaaggtagaggcatctcaaatttattcccaattcaatagtaatgttttgaaacaatttac
aatggagatgatattatagggtaggatagaacaggttcaggtaaaactcttgcatattgc
ctcccaattcttgaaagaataagaggattaggattaaaataaaataaaaatccttatgta
ttagtattattaccaacaagagaattggcaatccaagtaactactgaatttaatactatt
ttacataaagaaaatgaatacagaatttatagtatatatggtggtacagatctaagaaac
taaattgattaagtgagataaggatgtgaaatagtagttggaacacctggaagaatatag
gatcttttggaaagaaaggttctaaaattagatgaaattcaagtggttgttttggatgag
gcagatcaaatgttgaattttggattttaagaaaatattgaaaagatcatgtcatatttc
aatgaaagaaaaatttaaatgctattatttagtgctactatacctgattgggtaaaggaa
ctatcacacaaatatatggaagccaataccaaacatattaatttaattaagagacatgag
acttaaacttcaacaactgtcaaacattatgccctctaatgtgcaagaaatcaattaagc
ggtgcaataggtgatgtagtttcagtttatggtggaagacatgcaagaactattatcttt
tgtgagactaaaagagaatgcaatgaaattattttgcattcaaaattaccagctgaaaca
taaccattacatggagacattccttaataataaagaacagtgacatttgaaggatttaaa
aatggaaaattcaaatgtttagttgcaaccaatgttgcagctagaggattggatttccca
taagtagatttaattatttaatgcaatcctcctaaagatattgaatcatatatccacaga
tcaggaagaacaggtagagctggaaaggatggagtatgtatcactttctattcaaagaag
gatatgggtttgattgaaagagtggagagagtagctaaaataaaattcataaaaatttct
gctcctcaacattaagatattatcaaggcaagctcaagagatttataaactagtttataa
gtagttagtaaagagattgttgatatgttttaacctgtggcttaagagatcatttctaga
tgtgatccagtagaagccttggctagagccttagcatgtgtgagtggatataaagacaaa
ctatagaatagatctatgttaggatcttttgagggatatataacatacgtgttaagatca
tcaactccattctaagcttgtggttatatttggaagttcttaaagaataacttttcagaa
tagatttgcaatagtattaagggtatgaaaaaaataagaaatgagaacggtgttgcattt
gatattagtgaagatgtcaaggaagaatttgaaaatcaatactaggagatatcacaaaat
ggatattgcagaggaattgaaattgaataagccactagtcttccagatataattgaagaa
taattttaatcacatcaaaactatcattaataaccaacagtttaagtctcacaaacagtt
aaaaaggaataagaaatatttataggagggttagattttaagattacagaagatgaaatt
aaaaatgaattcaaaaatagaggagttgagttattcaatctcagattattaagaggctag
gatggttaatcaaaaggatctgcttttggagtgtgtagaactaaagaaatggtatcagtg
gctataaaataaaatggaactaaattcagaggaagaaacgttcgtgtaaatatggcaaat
gaaaaacctaaatga
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