Pseudoalteromonas translucida KMM 520: PTRA_a0373
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Entry
PTRA_a0373 CDS
T04220
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ptn
Pseudoalteromonas translucida KMM 520
Pathway
ptn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTRA_a0373 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptn03021
]
PTRA_a0373 (rpoD)
Transcription machinery [BR:
ptn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTRA_a0373 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ALS31738
UniProt:
A0A0U2WEV8
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All DBs
Position
I:complement(364756..366603)
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AA seq
615 aa
AA seq
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MDPTPQSQLKLLILKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIKVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIIVGFIDPNEDTAPISATNI
GSELSAKQLNDDDKDDDDSDEDDEDEEEVDTGPDPEEARVHFENLRDLYNKARETFEAKG
RSHPDSLAAIFEIGELFKTFKLIPKQFDRMVNNMREMMDRVRVQERLIMKQAVQIAKLPK
KTFVKHFANNETDATWVDLEIAANEKYSAKLEEVKPEIIRSLNKLRVIESSTGLNIERIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPN
PEELAERMMMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPIDSATMES
LRGATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSDLLKSFLDAK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactcctcagtcacaattaaaacttctgattctaaaaggtaaagagcaaggc
tacttaacttttgcagaagtaaatgatcaccttccacaagatattatagactcagatcaa
gtagaagatatcattagcatgattaatgacatgggtatcaaggttagcgaaaacgcgcca
gatgccgatgaactaatgatgcaagaaacaacgacagacgaagacgcagctgaagctgcc
gctgcagcccttgcgaccgtagaaaaagagatcggccgcacaacggatccggtacgcatg
tacatgcgtgaaatgggtactgttgaacttctgacccgtgaaggcgaaattgtaatcgct
aagcgtattgaagaaggcattaaccaagtacaaatttcggttgctgaataccctgaagca
attacttacctactcgagcagtgggataagtttgaagcagaagaaatgcgccttagcgat
attatcgttggctttattgatcctaatgaagatacagcgccaatttcagcaactaatatt
ggttcagaattaagtgctaagcaacttaatgatgacgataaagacgatgacgacagcgac
gaagatgatgaagacgaagaagaagtagacacagggccagatcctgaagaagcacgtgtt
cattttgaaaatttacgtgatttatataataaagcacgtgaaacgtttgaagctaaaggt
cgctcgcaccctgattctcttgccgctatatttgaaattggtgagttattcaaaaccttt
aaattaatacctaagcaatttgatcgcatggttaataacatgcgtgaaatgatggacaga
gttcgcgttcaagaacgtcttatcatgaaacaagcagtacaaattgctaagttaccaaag
aaaacgtttgttaagcactttgctaataacgaaacggatgctacttgggttgatttagaa
attgcagctaacgaaaagtactcggcaaaacttgaagaagttaagcctgagatcattcgt
agtcttaataaattacgtgttattgaaagtagcactggcttaaatattgagcgtataaaa
gacataaaccgtcgaatgagtattggtgaagctaaagctcgccgtgcgaaaaaagagatg
gttgaagctaacttacgtttggtaatttcaattgctaaaaaatatacaaaccgtggttta
cagttcttggatttgattcaagaaggtaatattggtttaatgaaagccgttgataagttt
gaatatcgccgtggttataagttttcgacttatgctacgtggtggatacgccaagcaatt
acacgctctattgctgaccaagcaagaacgatccgtattccggtacatatgattgaaacg
attaataaacttaaccgtatttcacgtcaaatgttacaagaaatgggccgtgagccaaat
ccagaagaattagctgaacgcatgatgatgcctgaggacaaagtccgtaaggtacttaaa
attgctaaagagccaatttcgatggaaacaccgattggtgatgatgaagattcgcattta
ggtgactttattgaagatacgaccattgattcgccaattgattcggcaactatggagtcg
cttcgtggcgcaactaacgacgtacttgctggcctaacagcccgtgaagctaaagtactg
cgtatgcgttttggtattgatatgaataccgaccacaccttagaagaagtaggtaagcag
tttgacgtaacacgtgaacgtattcgtcaaatagaagcgaaggcgctgcgtaaattacgt
cacccttctcgctctgatttactgaaaagctttttagacgctaaataa
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