Pseudoalteromonas translucida KMM 520: PTRA_a2249
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Entry
PTRA_a2249 CDS
T04220
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptn
Pseudoalteromonas translucida KMM 520
Pathway
ptn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTRA_a2249 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptn03019
]
PTRA_a2249 (rne)
03009 Ribosome biogenesis [BR:
ptn03009
]
PTRA_a2249 (rne)
Enzymes [BR:
ptn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PTRA_a2249 (rne)
Messenger RNA biogenesis [BR:
ptn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PTRA_a2249 (rne)
Ribosome biogenesis [BR:
ptn03009
]
Prokaryotic type
rRNA processing factors
PTRA_a2249 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALS33359
UniProt:
A0A0U2ISR2
LinkDB
All DBs
Position
I:2074623..2077940
Genome browser
AA seq
1105 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVEY
GADRHGFLPLKEIARTYFPAGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWEAIGVAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRMEKQHKCDIVIIPNQHMETP
HYEVMRLRKDETIETVSYGQIVAPEPEAFEMSKSPVAPVREEPMLKGVVMPATPAPQAAP
ANVVAPAETKAQSGLLDAIGKWFKSLFASETVEVKKEETQKQEARDNTRNNDNRRRNNNN
QRRRNNPRSKPRTERTADEEVKTNSVSTPEVATQTNENQERGENRNKRRRNPNSRKRPEP
RTEDKDAVKVDAPAKVEAETKPVQAEEPKDQKPKVRRQRRNLRKKVRLQDENAEQVQTTD
EAPVQATEKETPVAQEQAPVVEKQTQTAAEKTAHIKEEKVEDVDSNDETPTTEDEQEQTR
TRSRRSPRHLRASGQRRRRPEGEGNEAKSDEAPAFVPVADQAAAEYEAELKAKSAAKPVD
AAQQVEQAIAVEDLAKVEAVEEPVQTEEPAKVETPVAAEEPAKVETPVVTEEPAKVETPV
VTEEPAKVETPVVTEEPAKVETPVAAEEPAKVEIPVVTEEQTKVETPVVTEEPTKVETPV
VTEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPV
VTEEPAKVETPVVTAAPHVKTVVTQGSASAPMAQPTPVADSEVKHTSVAMAHDKRELVPD
SGLRAGSIKPAGRASSTMTKTMSAD
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcactcgcattgaaccatctcttgaagcagcatttgttgaatac
ggtgctgatcgtcatggtttccttcctttaaaagaaattgcccgtacttacttcccagct
gggtatactttccatggccgtccgaatattcgtgacgtgatcaaagaaggtcaagaagtt
atagtacaagttgataaagaagagcgtggccaaaaaggcgcagcacttactacctttatc
agcgttgccggtagttacttagttttaatgcctaataatcctcgtgctggcggtatatct
cgtcgcattgaaggtgatgagcgtactgaacttaaagagtcacttagccgcttagaactt
cctaaaggtatgggcttaattgttcgtactgcaggtgttggcaaatcgtttgaagaatta
aactacgatttaaaagccctacttgttcattgggaagcaattggtgttgcagccgacagt
gctaaagcgccgtttttaattcaccaagaaagcaacgtaatatttcgcgcaattcgcgac
tatttacgtcgtgatattggcgaaatactaattgataaaccacgtgtttttgaagaagct
aaagcgcatattgaacgttttcgccctgactttatgagccgtgttaagctttatcaaggt
gatacaccattatttacgcattaccaaattgaaagccaaattgagtctgcgttccaacgt
gaagtacgcttgccttcaggtggttcaattgtaattgaccctacggaagcattaacctct
atcgatattaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcacttaat
actaacttagaagcagcagatgaaattgcacgtcaattacgtcttcgcgacttaggtggt
ttaattgttatcgattttatcgatatgacaccaccacgccatcagcgtgaagtagaaaac
cgtctaaaagatgctgttcgccctgatcgtgctcgtgtacaaattggtaaaatttcacgt
tttggtttactcgaaatgtcgcgtcagcgtttgcgcccttcattaggtgaagcaagccaa
ggcccatgcccacgttgtagtggccaaggtacgattcgttctaacgaatcaattgccctg
tctattttgcgtttaattgaagaagaagcaattaaagacaacactgcacaagttaatgct
caagtgcctgttgctgttgccgcttatttattaaatgaacaacgccgtagtgttcatcgc
atggaaaaacaacataagtgcgacatagtgatcattcctaatcaacacatggaaacacca
cactacgaagtaatgcgcttacgtaaagacgaaacgattgaaacagtaagctatggacaa
attgttgctccagagcctgaagcatttgaaatgtctaagtcgcctgtagcaccagtacgt
gaagagccaatgttaaaaggcgttgtaatgcctgcaacaccagctccacaagcggctcct
gctaacgttgttgcccctgctgaaactaaagcgcaaagcggtttactggatgcaattggt
aagtggtttaaatctttattcgccagcgaaaccgttgaagtaaaaaaagaagaaacacaa
aaacaagaagcgcgcgataatactcgtaataacgataatcgtcgtcgtaataacaacaat
cagcgtcgtcgtaataaccctcgttctaagccacgcactgagcgtactgcggatgaagag
gttaaaactaactctgtatcaacacctgaagtagcaacgcaaactaacgagaatcaagag
agaggcgagaatcgcaataagcgtcgtcgcaaccctaattcacgtaagcgtccagagcca
cgcactgaagataaagatgcagtaaaagtagatgcacctgcaaaagtagaagctgaaact
aagccagttcaagccgaagagccaaaggatcaaaaaccaaaggttcgtcgtcagcgtcgt
aatttacgtaagaaagtacgcctgcaagatgaaaatgctgagcaagtacaaacaacagat
gaagcacctgtacaagctacagaaaaagaaacacctgtagcccaagagcaagcgcctgtt
gtagaaaagcaaactcaaacagcggcagaaaaaacggctcatattaaagaagagaaagtt
gaagatgttgactctaacgatgaaacacctacaaccgaagacgagcaagagcaaactcgt
acacgttcacgtcgctcgcctcgtcatcttcgtgcatcaggtcagcgtcgtcgtcgccct
gaaggtgaaggtaatgaagctaagtcagatgaagcaccggcatttgttcctgttgccgac
caagctgctgcagagtatgaagcagaacttaaagctaaatctgcagctaaacctgtggat
gccgcgcaacaagttgaacaagccattgcggttgaagacttagcaaaagttgaagctgta
gaagaaccagtacaaactgaagagccagctaaagttgaaactccagtagcagctgaagag
ccagctaaagttgaaacgccagtagtaactgaagagccagctaaagttgaaactccagta
gtaactgaagagccagctaaagttgaaacgccagtagtaactgaagagccagctaaagtt
gaaactccagtagcagctgaagagccagctaaagttgaaattccagtggtaactgaagag
caaactaaagttgaaactccagtggtaactgaagagccaactaaagttgaaactccagta
gtaactgaagagccagctaaagttgaaactccagtagtaactgaagagccagctaaagtt
gaaactccagtggtaactgaagagccagctaaagttgaaacgcctgttgtaactgaagag
ccagctaaagttgaaactccagtagtaactgaagaaccagctaaagttgaaactccagta
gtaactgaagaaccagctaaagttgaaacgccagtagtaactgcagcaccacatgttaaa
acagtagtaactcaagggtcagcaagtgcgccaatggcacaacctactcctgtagctgat
agcgaagtaaaacatacgtctgttgctatggctcacgataaacgtgaactagtgccagac
agtggtttacgtgcaggttcaatcaaacctgctggtcgtgcaagttctacaatgaccaaa
acaatgagtgctgattaa
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