Pseudoalteromonas translucida KMM 520: PTRA_a2295
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Entry
PTRA_a2295 CDS
T04220
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ptn
Pseudoalteromonas translucida KMM 520
Pathway
ptn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PTRA_a2295 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptn03400
]
PTRA_a2295 (recB)
Enzymes [BR:
ptn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PTRA_a2295 (recB)
DNA repair and recombination proteins [BR:
ptn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PTRA_a2295 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALS33401
UniProt:
A0A0U2X0H5
LinkDB
All DBs
Position
I:complement(2124580..2128236)
Genome browser
AA seq
1218 aa
AA seq
DB search
MQALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIAYDANSLLNKPLSVEQIL
VVTFTDAATQEIKDRVRNRIITARDALLGQDPKDELIAGVIAAVDDKHRAFDLLDAAAKS
MDEAAIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKEKT
DAILGVFAAPEALFGKVSSILNKANAQITPQVNLDDVWQARDEYISRIPAFKKAVLEQEF
IAAIKSSGLSGSKTPGRKGSLAALEAFCLGGDLFFEFGTSKYSFEIWSSENLSDISNYKK
NQPLFTHSLLSQFDELAALNNTINQGLAIAVVQHAAKWVKAAVIKRKQEQSVITPDDLLS
NLHSALNNEQGNVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYQQEHTTLAMIGDPKQ
AIYGFRGADIFTYIGAKEAVQKQQQFTLGTNFRSSSDVVSSVNSLFGKHANSFIYNDAIP
FNAVAAKGKKADESFLIDGQPATAFEFCVFSDTAADEKNKPTGKAIGQQHLATFFANKIV
TLLTQAEQGRACIGEKPVSAADICILVRDRVEAQIIKKALSNAKIASVYLSRESVFNQEL
SHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNEIYALADDEAQWQEHLNFFAQLSHIW
NKQGAMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIELEGTLRLLRWF
AQKVSQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYRETKEALYHNNGT
LIYDLSKGDDALQKAEQERLAEDLRLLYVALTRAVHFCAIGMYNIGQGQSSRLAIQSSAL
GHVLFAGLEITSSQIWRNHLADFCSEHTGMDYQQFTSEDLLAQGTLDFNNSADAQQILSI
NNVTASIERNWRATSFSALSFKKHIDHLAPGRSDEDHEKDEFAVQEDEAPSVYSFPKGAK
PGSCLHEIFEQIDFTSPIEHPVSKEHNLADVIKRSLEKYHISEHWQDITQQWILDVLACP
LNGDSNVNTDASGNSTSGNNISGNSSLVNSNGLSLSQLAPSDCLVEMEFNLPLKSLSAPQ
LNEILIKHFGFEHSKLEFSHVKGLLKGFIDLIFCYQGKYYILDYKSNYLGSNAADYEHDM
LEQAMSSHQYHLQYLIYTVALHRLLKQRIADYSAETHLGGVYYTFLRGMPAGQGVYFKKL
TTEQVTILDSLFSQGAML
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaatccacttacaatgccattaacagggcaaagcttaattgaagccagt
gccggtacgggtaaaacgtatacaattactggcctgtatttacgttacttattgggaatg
caaatagcctatgatgcaaactcgctattaaataagccgctcagtgttgagcaaatactg
gtggtaacttttactgatgctgccacgcaagaaattaaagaccgcgtgcgtaatcgtatt
atcaccgcgcgcgatgcacttcttgggcaagacccaaaagatgagcttattgcaggggta
atagctgcagttgatgataaacaccgcgcctttgatttactcgatgcggctgctaaatca
atggacgaagcggctatttttaccattcatggcttttgtcagcgcatgctaaaacaacac
gcgtttgagtcgggtgtggcgtttaacttagaatttattttggatgagcgcgacatattg
ctcgaaaccattaaagatttttggcgcgcctttgtatatccactcaataaagaaaaaacc
gatgctattttaggcgtgttcgccgcgcctgaagctttgtttggcaaagtgtcgagtatt
ttaaataaagcgaatgcgcaaataactccgcaagtaaacttagatgacgtatggcaagcg
cgtgacgagtatataagccgaatacctgcatttaaaaaagcggtgttagagcaagagttt
atagctgccattaaaagctctggcttaagtggttctaaaacgccagggcgcaaaggcagc
cttgcagcacttgaagccttttgtttaggtggcgatttgttttttgaatttggtactagc
aaatactcgtttgagatatggagtagcgaaaacttaagcgatataagcaattataaaaag
aatcagccgctatttacacattcattactgagtcaatttgacgagcttgccgcacttaat
aacaccataaaccaggggctagcaattgctgtagtacagcatgcggcaaagtgggtaaaa
gcagccgtaataaagcgcaagcaagagcaaagcgtgatcaccccagatgatttacttagc
aatttacacagcgcattaaataacgagcaaggcaatgtactggcgcaaaaaattgcccag
ttgtttccggtggctatgatagatgagtttcaagataccgatccgattcagtacggtatt
tttagtaaaatttaccagcaagagcacactacactggcgatgattggcgatcctaaacag
gctatttatggttttaggggggcagacatttttacctatattggtgccaaagaagcagtg
caaaaacagcagcaatttacgctaggtactaactttcgctctagcagcgatgtagtaagc
agcgtaaacagcttatttggtaagcacgctaacagttttatttataacgatgccataccg
tttaatgcagtagcagctaaaggtaaaaaagcagacgagtcgtttttgattgacggacaa
ccagctactgcgtttgaattttgtgtatttagcgacaccgccgcagatgaaaaaaacaag
ccgacgggcaaagccattgggcagcagcacttagccaccttttttgccaataaaatagtc
actttactaacgcaagccgagcaagggcgtgcttgtattggtgaaaagccagtaagcgct
gcagatatttgtatattagtgcgcgaccgtgttgaagcgcaaataatcaaaaaggccttg
agcaacgctaaaattgccagcgtgtatttatcgcgcgagagtgtgtttaaccaagagctt
agccaccacctacttaattttttaactgcgttgcatggccagtatgatgagtcgctatta
cgtggcgtgttagcagggccgttattttgtttaagctataacgaaatatatgcactggca
gatgacgaggcacaatggcaagagcacttaaacttttttgcgcagcttagccatatttgg
aacaagcaaggcgctatggcaatgcttgagcgcttaatgagccacaatcaacttagtgct
aaatggcaaggcctaggctacaacgttgagcgttggcttaccgactttaggcaccttggc
gaaatactacagcaaaaacaaattgagcttgagggcacattgcgtttactgcgctggttt
gcacaaaaggtaagccagcaagatggcgaaacagtgcaagtacgcctagagagcgacgct
aatttagttaaaatagtgactatgcacgcctcaaaagggcttgagtatccgctggtattt
atgccctttgctagtggctatcgtgaaacgaaagaagcgctgtatcataataatggcaca
ctaatttacgatttaagtaaaggggatgacgcactgcaaaaagcagagcaagagcgcctt
gccgaagatttacgcttactgtatgtagcactcactcgcgcggtacacttttgtgctatt
ggtatgtataacattgggcaagggcaaagtagtcgtttggcgatacaaagcagtgccctg
gggcatgtgttatttgcagggcttgaaattacgagcagtcaaatttggcgtaaccattta
gccgatttttgcagcgagcatactggtatggattatcagcaattcacctcagaggattta
ttagctcaaggtactttagattttaataatagcgctgatgctcagcaaatattgagtata
aataatgtaacagccagtattgagcgtaattggcgagcaactagctttagtgcgctgagc
tttaaaaagcatatcgaccacctagcgcctgggcgcagtgatgaggatcatgaaaaagat
gaatttgccgtacaagaagacgaagccccttctgtgtatagctttccgaaaggggcaaaa
ccggggagttgtttacacgaaatttttgagcaaatagattttactagcccaatagagcac
ccagttagtaaagagcataatttagcagacgttattaaacgcagcctagagaagtaccat
attagtgaacactggcaagatattactcagcagtggatattagacgttcttgcttgcccg
cttaatggcgatagcaatgttaatactgatgcctcaggtaatagtacctcaggtaataat
atctcaggtaacagctctttagttaacagtaatggcctgagcttaagccaactagcgcca
agcgattgcctagtagaaatggagtttaacttaccgcttaaaagcttaagtgcgccgcag
cttaatgaaattcttataaagcattttggttttgagcacagtaagctcgaatttagccac
gtaaaagggctgttaaaaggttttatcgatttaatattttgctaccaaggtaaatattat
attttagattataaatctaattacctaggtagtaacgctgctgactacgagcacgatatg
cttgagcaagccatgagtagccaccagtatcatttacagtatttaatttacaccgtagcg
ctgcatcgtttgctaaaacagcgtatagctgattactcagctgaaactcatttaggcggt
gtgtattacacctttttacgtggcatgccagctgggcaaggtgtgtactttaaaaagctt
accactgagcaagtgactattttagatagtttgtttagccaaggagccatgttatga
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