Pseudoalteromonas translucida KMM 520: PTRA_a2985
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Entry
PTRA_a2985 CDS
T04220
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptn
Pseudoalteromonas translucida KMM 520
Pathway
ptn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTRA_a2985 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptn03019
]
PTRA_a2985 (vacB)
03016 Transfer RNA biogenesis [BR:
ptn03016
]
PTRA_a2985 (vacB)
Enzymes [BR:
ptn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PTRA_a2985 (vacB)
Messenger RNA biogenesis [BR:
ptn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PTRA_a2985 (vacB)
Transfer RNA biogenesis [BR:
ptn03016
]
Prokaryotic type
tRNA degradation factors
PTRA_a2985 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
UPF0158
Motif
Other DBs
NCBI-ProteinID:
ALS34017
UniProt:
A0A0U2X1Z0
LinkDB
All DBs
Position
I:complement(2817842..2820334)
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AA seq
830 aa
AA seq
DB search
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDEERQIAFKRRL
RAMERDGQLYFNKHKCYALIDEAGLTKGKVVGHRDGFGFLEVEGENKDWFIAKHQMNMVL
HGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGIAVVVAEDPRITQDIMIL
PGSENGARHNQMVQVKITQNPTRNMNAVGKVIDVLGEHLAPGMEIEVALRNHDIPHVWPE
EVEAQVAHLGEFVDEADKQNRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAI
ADVSHYVGMNTPLNKEAIERGNSVYFPEQVIPMLPKVLSNGLCSLNPEVDRLCMVAEMTV
SDSGKLSGYKFYEAIMNSHARLTYTKVNAILQNDEKLRKEYAHVVPHLTDLQQMYLALKS
ARQERGAIEFETLETRFVFNAQRKIESIVPVIRNDAHKLIEECMILANVSAAKLLEKHEA
SALFRVHDEPDSEKLGNFTKFLGELGIESTLSDEPTPKEITQVLARLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQHTSGEYAY
TDDEVDKLGEQCSTTERRADDATREVADWLKCEFMQDHVGTEFDGVISSVTNFGLFIRLD
DLQIDGLIHVANLGNEYFAHDAAKHCLIGEQTHKVYRLGDKVTVSVASVSLEDRRINLTL
KGDKAQDRYARRRGPKGADKSEHAPASVRSQLKAGKVPGKKSHGDEKPKGKKRPASKDKG
KPANKSATKPADKKAVDATANKKPKKKAVKKPKRVGKNARKRNTPGAENT
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaagatccaaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agccgtgagtttatacttactcaccttcaagagcgttcaaaacctgctaactatgcacag
ttatgtgaagaactagcggtaaacgatgaagaacggcaaattgcatttaaacgccgcctt
cgtgctatggaacgtgacggccagctgtattttaataagcataaatgttacgccctaatt
gacgaagccggtttaactaaaggcaaagtagtaggccacagagacggttttggcttttta
gaagttgaaggcgagaataaagattggtttattgctaaacaccaaatgaacatggtgtta
cacggcgacattgtacttgctaaaggcactaaacgtggctctggctcaaaatgcgatgca
cgtattataaaggtgcttactaacgagcgcgcgcccattgttggccgctattttgttgaa
catggtattgctgttgtagttgccgaagatccgcgtattacccaagacataatgatttta
ccgggaagcgaaaacggcgcgcgtcataaccaaatggtgcaagttaaaataacgcaaaac
cccacccgaaatatgaacgcggtaggtaaagtaattgacgtacttggcgagcatttagcc
ccaggtatggaaatagaagttgccttgcgtaaccacgatattccgcacgtttggcctgaa
gaagttgaagcgcaagtagcccaccttggcgaatttgttgacgaggctgacaagcaaaac
cgcgtagatttacgcgacctaccattagtaaccatagatggcgaagacgcacgcgacttt
gatgatgccgtttattgtgagcctaaaaagtcaggtggttggcgtttatgggttgccatt
gccgatgtgtcgcattacgtaggtatgaacaccccgctaaacaaagaagcgatagagcgc
ggtaactcagtgtattttcctgagcaagtaattcctatgctgcctaaagtattgtctaac
ggcttatgttcgcttaaccctgaagtagatcgcttatgtatggttgccgaaatgacagtg
tcagattcgggcaagctttcgggttataagttttacgaagcgataatgaattcgcatgca
cgtttaacttacaccaaagtaaatgccattttacaaaacgatgaaaaactacgtaaagaa
tatgcgcatgtagtgccacatttaactgatttacagcaaatgtatttagcgcttaaatcg
gctcgccaagagcgtggtgcaattgagtttgaaacactcgaaacccgttttgtatttaac
gcacagcgtaaaatagaatcgatagtgccggttattcgtaacgatgcgcacaaacttatt
gaagaatgtatgattttagccaacgtatcggcggctaaattacttgaaaaacacgaagcc
agcgcgctatttcgtgtgcatgacgagccagatagcgaaaaactaggtaactttactaag
tttttaggcgaacttggcattgaaagcacgctaagcgacgagccaacacccaaagaaatt
actcaagtgctagctcgtttaggcgatcgcccagaagcagagcttattcaaaccatgctg
ctgcgctcaatgaagcaagctgtgtatcaaccagataacataggccactttggcttagcc
ttatctgcttatgcgcactttacttcaccaattcgtcgttatcccgacttagtagtgcat
cgtgcaattaaagcggtacttaaagcacaaggccaacatacttcaggcgaatacgcatac
acagatgacgaagtagataagttaggtgagcagtgttctaccacagagcgccgcgccgac
gatgctactcgcgaagtagccgattggttaaaatgtgagtttatgcaagatcacgttggc
actgagtttgacggtgttatttcatcggtaaccaattttggtttatttattcgtttagat
gatttgcaaattgatggccttattcatgttgccaacttaggcaacgagtattttgcccat
gacgccgcaaagcattgtttaataggcgagcaaacgcacaaagtatatcgccttggcgat
aaagtaacggtaagtgttgcatcggttagcttagaagacagacgtataaacttaaccctt
aaaggcgataaagcgcaagatcgatacgcgcgccgccgtgggccaaaaggcgctgataaa
tctgagcatgcacctgcgagcgtgcgctcacagttaaaagcaggcaaagtaccgggtaaa
aaatcgcatggcgatgaaaaacctaaaggtaaaaaaaggccagcaagtaaagataaaggc
aaacctgcaaataagtcggcaactaaaccagctgacaaaaaagcagtagatgccacagca
aataaaaaaccgaaaaaaaaggccgttaaaaagcctaaaagagtaggcaaaaatgcccgc
aaacgtaataccccaggagcagaaaatacgtga
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