Pseudomonas tolaasii: I7845_21990
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Entry
I7845_21990 CDS
T08975
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptol
Pseudomonas tolaasii
Pathway
ptol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I7845_21990 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptol03019
]
I7845_21990 (rne)
03009 Ribosome biogenesis [BR:
ptol03009
]
I7845_21990 (rne)
Enzymes [BR:
ptol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I7845_21990 (rne)
Messenger RNA biogenesis [BR:
ptol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I7845_21990 (rne)
Ribosome biogenesis [BR:
ptol03009
]
Prokaryotic type
rRNA processing factors
I7845_21990 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXQ17544
LinkDB
All DBs
Position
4956105..4959260
Genome browser
AA seq
1051 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHNNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVA
APVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREERAPREERQPREAREVREETPTVAREERAPREERAPRTPR
APREDRKPRGEREERVRELREPLDAAPAVAAEAASEERPARQPREERAPREERQPRPPRE
ERQPRAEQAAAASEEEVLTGEEQHEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNV
IEGSEEAGENAEAATSEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEET
VAVEAPAAQTPVVEAPVVETPAVEAPVVETPVVEATTPIEAPVVPEVEVAQAPEAQPEVE
VAVVEPAPVVEPEPVVQAAVETPVVEAAPEVREVREEQTAFQWAAEPATPVEAPAAPVAK
EAPAPATEAVAAEPAPVVEAAPVVEPAPVVEAPVVAEVAAPVVETAPVSALTENGRAPND
PREVRRRRKEAEAAAAAAAAQEAEHESKPLA
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccaacgc
ctctacgacctggacatcgaatccggtgcacgcgagcaaaagaaggccaacatctataaa
ggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtggaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggcgggccgc
tacctggtcctgatgccgaacaacccgcgtgccggcggcatttcccgtcgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcaccggccgacatgggc
ctgatcgttcgcaccgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcttcgctggaccgttccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtcgaactgcct
tccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccacgaagggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccagctgcgtctgcgtgatatcggcggcctgatcgtgatcgac
ttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagctgaccgtgcccgcgtgcaagtcggccgcatttcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccatccctgggcgagagcagcggcatcgtctgcccgcgt
tgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcgcaagtgccgatcccg
gtcgccgccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttcgaagtgcag
cgcctgcgtgatgacagcccggaagcccacaacaaccagtccagctacgaaatcgctgct
gccgctgccgaagtggaagaagtccagcccgccgctgctacccgtaccctggttcgccag
gaagccgcggtcaagactgcgccggcccgcgccaacgcgccggttccgaccgaagtcgct
gctccggttgccgctcctgccgccctgcctgagccaagcctgttcaagggtctggtgaag
tcgttggtcagcctgttcgccaccaaggaagagcccgttgcgccggttgtggttgaaaaa
ccggttgccgaacgcccggcacgtaacgaagagcgtcgcaacggtcgccaacagagccgt
aaccgcaacggtcgccgcgacgaagagcgcaagccgcgcgaagaacgagcaccgcgtgag
gagcgcgccccacgcgaagagcgtcagcctcgcgaagcccgcgaagtgcgtgaagaaacc
ccaaccgtagcccgtgaagaacgtgcaccacgcgaagagcgcgcaccacgtactccgcgc
gccccacgtgaagaccgcaaaccacgtggcgagcgtgaagagcgcgtgcgtgaattgcgc
gagccgctggatgccgcacctgccgtcgccgctgaagccgccagcgaagaacgcccggcc
cgccagccgcgtgaagagcgcgccccacgtgaagagcgccagccgcgcccaccgcgtgaa
gagcgtcaaccacgcgccgagcaggccgctgccgccagcgaagaagaagtactgaccggt
gaggagcagcacgaagacggccaggacaacgccgaaggcgatcgtccacgccgccgctcc
cgtggccagcgtcgccgcagcaaccgtcgtgaacgtcagcgtgatgccaacggcaacgtg
atcgaaggctcggaagaagccggcgagaacgcagaagctgcgaccagcgaaccgactggc
gccgaactggctgccggcctggccgttaccgctgctgttgccagctcggtcatcagcgca
cctgccgaagcccaggctcacgagcaggctgaacgcgctactgctgctgtcgaagaaacc
gtagcggttgaagcacctgccgcccaaaccccagtggttgaagcgccggttgttgaaaca
cctgcagttgaagcgccagttgtagagacaccggttgtcgaagcgactaccccaatcgaa
gcgccagttgttccggaagtggaagttgcccaggcacctgaagcccaaccagaagttgaa
gtggcggtcgttgagccagcacctgtggttgagcctgagcccgtggttcaagccgctgtg
gaaacaccggtcgtcgaagccgctccagaagtgcgtgaagttcgcgaagaacagaccgcc
ttccagtgggctgccgaaccagcaactccggttgaagcaccggctgcccccgtggcaaaa
gaagcgccagcaccggctaccgaagctgtagctgccgagcctgcgcctgtggttgaagcc
gctccggtcgtcgagcctgcgccagtggtagaagcgccggtcgttgccgaagtggcagcg
ccagtggttgaaaccgcaccggtcagcgccctgaccgaaaacggccgtgcaccgaacgac
ccacgtgaagtgcgtcgtcgtcgcaaggaagctgaagctgcagcagctgctgccgcagca
caggaagcagaacacgagagcaaacctctcgcctga
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