Pseudomonas tolaasii: I7845_26325
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Entry
I7845_26325 CDS
T08975
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptol
Pseudomonas tolaasii
Pathway
ptol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptol00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I7845_26325 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptol03021
]
I7845_26325 (rpoD)
Transcription machinery [BR:
ptol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I7845_26325 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QXQ18348
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Position
5889217..5891067
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYNRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDSEDDDAESSGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRTNKQAIAELIALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttcttggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagctgctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgagatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccacattctctccgagtacaaccgcgtcaccaccgaaggtgggcgcctg
tccgacgttctgagcggttacatcgacccggacgacggcattgcgccgcctgccgccgaa
gtgccgccgcctgtcgatgccaaggctgcgaaagcggacgacgattccgaagacgacgac
gctgaatccagcggcgacgacgaagacgaagttgaaagcggtccggacccgatcatcgct
gcacagcgtttcggtgcggtttccgatcagatggaaatcacccgcaaggccctgaaaaag
cacggtcgcaccaacaagcaggcgattgccgagctgattgcgctggccgagctgttcatg
ccgatcaagctggtaccgaagcaattcgaaggcttggttgagcgtgttcgcagtgccctt
gagcgcctgcgtgctcaagaacgcgccatcatgcagctgtgtgtacgtgatgcacgcatg
ccgcgcgccgacttcctgcgccagttcccgggcaacgaagtagacgaaagctggaccgac
gcactggccaaaggcaaggcgaaatacgctgaagccattggtcgcctgcagccggacatc
atccgctgccagcagaagctgaccgcgcttgagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgtggttacaagttctcgacgtatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagcctgaaagaagcgactcgtgacgtactgtccggcctcactgcccgtgaagccaaa
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacccgcgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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