Planktomarina temperata: RCA23_c00180
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Entry
RCA23_c00180 CDS
T03229
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA23_c00180 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptp03019
]
RCA23_c00180 (recQ)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c00180 (recQ)
Enzymes [BR:
ptp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCA23_c00180 (recQ)
Messenger RNA biogenesis [BR:
ptp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCA23_c00180 (recQ)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RCA23_c00180 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
SAM_GIDA_C
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
AII85591
UniProt:
A0AAN0RG64
LinkDB
All DBs
Position
18217..20277
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AA seq
686 aa
AA seq
DB search
MPYTTLLRDVFGFDAFRPGQEEIVRAVTEGQNVLAIMPTGGGKSLCFQLPALMRDGVTVV
ISPLIALMRDQVRALQAAGVGAGALTSGNTPEETDAVWEGLEQGTLKLLYIAPERLAAGS
SLGMLRRVGVSMIAVDEAHCVSQWGHDFRPDYLRIGELRRALNVPLAAFTATADEETQAE
IVNKLFDGQAPASFLHGFDRPNIHLAFAAKDQPRKQILGFAAARKGQSGIVYCGTRAKTE
TLAQALREAGHSACFYHGGMDAEDRRIVETRFQQEDGLIVVATVAFGMGVDKPDIRWVAH
ADLPKSIESYYQEIGRGGRDGAPAETLTLFGADDIRLRRAQIDEGLAPADRKMADHARLN
ALLGLAEALSCRRSALLTYFGETASNCGNCDLCDTPPEVFDGTEPVRMALSAILRTGEWF
GTGHLIDILRGNATDKVRQRAHHELPTFGVGKAISKAQWQAIFRQMMGFDLIRPDPERHG
GLRFTQNARPLLKGEAQIQLRKDSITAAGQERRPAVKSLVSEEDAPLLSALKAKRRALAE
QQKVPAYIVFNDKTLIEMAERRPQNLDQMASIGGVGAKKLESYGQAFLSVITGEQPPVHP
ARRKMAGRPEGELFDQLLERQLQLARGAFDGEKPLSCSTATLRMIAQRRPSSLEQLAQIS
GMTPARTERFGLAFLEILQSAKTALG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgccctataccacccttctgagggatgtcttcggattcgatgcctttcgtcccggtcag
gaggagattgtgcgtgcggtgacggaagggcaaaatgtactggctataatgcccactggg
ggtgggaagtccctgtgttttcagttgcccgccttgatgcgcgatggggtgacggtggtg
atctcgccactgattgctttgatgcgcgaccaagtccgcgctttgcaggccgccggggtc
ggagcgggggctctaacctctggtaatacgcccgaggagacagatgcggtttgggaaggg
ttggagcaaggcaccctcaaacttttgtatatcgcaccggagcggctggcggccggatcg
tctttggggatgttgcggcgggttggcgtgtcgatgatcgcggtggatgaggcgcattgt
gtctcgcaatggggccatgattttcgcccggattatctgcggattggcgagttgcgccgg
gcactgaatgtcccgctcgccgccttcaccgctacagccgatgaagaaacccaagcagaa
atcgtcaacaagctgtttgatgggcaggccccggcaagctttttacacgggtttgatcgc
cccaatatccatctggctttcgccgctaaggatcaaccgcgcaaacaaattcttggcttt
gcagcggcccgaaaggggcagtcaggcattgtctattgcggcacgcgggccaagacggaa
accctggcacaagcgctgcgcgaggcggggcattcggcctgtttttatcacggcggtatg
gatgccgaagatcgccgaattgtcgaaacacggtttcagcaagaagatggcctcatcgtt
gtggccactgtcgcctttggtatgggggtcgataagccggatatccgttgggtggcccat
gcggatttgcccaaatctattgagtcctattatcaagaaattggccgaggcgggcgtgat
ggcgcgccggctgagactttgaccctctttggcgcagatgacattcgcctgcgccgtgcg
caaatcgatgaagggctggcacctgcggatcgcaaaatggcagatcatgcgcggcttaat
gctttgttgggtttggcggaggcgttgagttgccgccgatctgcattgctgacctatttt
ggcgaaacagcatcgaactgcggcaattgtgatctttgtgatacgccgcctgaagttttt
gacggaacagaaccagtgcgcatggcgctatcggccattttgcgcaccggggaatggttt
gggacaggtcatttgattgatatattgcgcggcaatgccactgataaagtacggcaacgc
gcccatcatgaattgccgacctttggggttggaaaggccatcagcaaggcgcaatggcag
gcgatttttcggcagatgatggggtttgatcttatccgcccagacccagagcgccatggg
ggtctgcggttcacccagaacgcccggcccctattgaagggggaggctcaaattcagttg
cgcaaggacagcatcaccgccgcaggtcaagaacggcgtcccgcggtcaaatccttggtg
tcagaggaagatgcgccacttttatccgcgcttaaagccaagaggcgcgctttggccgaa
caacaaaaagtcccggcctatattgttttcaatgacaaaaccctcattgaaatggcagaa
cgccgcccgcagaacttggatcaaatggcctcaattggtggtgtgggggcgaagaaattg
gaaagctatgggcaggcctttctatcggtgatcacaggagagcagcccccggtccacccg
gcacggcgcaaaatggccgggcgcccagagggggagctttttgatcagcttctagagcgg
caattgcaattggcccgtggggcctttgatggggaaaaaccgttgagctgttcgaccgca
accctgcgtatgatcgcacaaaggcgaccaagctcattagaacaattggcgcaaatttcc
ggaatgacgcccgcccgaactgaacgttttggcttggcctttttagaaatcttgcagtct
gccaagactgctctaggttaa
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