Planktomarina temperata: RCA23_c00270
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Entry
RCA23_c00270 CDS
T03229
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA23_c00270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptp03019
]
RCA23_c00270
03016 Transfer RNA biogenesis [BR:
ptp03016
]
RCA23_c00270
Enzymes [BR:
ptp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RCA23_c00270
Messenger RNA biogenesis [BR:
ptp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RCA23_c00270
Transfer RNA biogenesis [BR:
ptp03016
]
Prokaryotic type
tRNA degradation factors
RCA23_c00270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AII85600
UniProt:
A0AAN0VGX7
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All DBs
Position
complement(29745..31991)
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AA seq
748 aa
AA seq
DB search
MAQIPSQADILEWIRAHPEKSSKRDIAKAFGIKGAARIDLKQMLKELEAEGHLMQRRRRF
NDPNSLPPVSVLQMLGPDSQGDMFAVPLEWEGTGHLPKILMRSRQGDPALGQGDRLLARL
TPVPDEDSHQYTGQLIRAIGTNPKRLLGIFRLTAEGGRIVAIDKGEGKEWLVAADAAGEA
KDGELVEAEQSGPKGRLGLPRARVVERLGDPSAPKAVSLIAIHQHGIPDAFPDAVMAQAD
AAKPATSKGRVDLTDLPLITIDPADARDHDDACCALLDEDPKNPGGFLLWVAIADVAHYV
TAGSALDAEARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVTRPCIAVEMKLSSTGEKL
SHRFVRGLMRSPASLSYEEAQAAVDGDPSERAAPLVDTVLSPLFGAYAALKQAREARQPL
ELDLPERKIILSDSGKVASVNFSERLDAHRLIEECMVLANVAAAETLIAKQQPLLFRVHE
EPSPEKLDSLRETAKSVGLVLAKGQVLQTRHLNQLLKVAAGKDESELINLSTLRSMTQAY
YSSQNMSHFGLALQNYAHFTSPIRRYADLLLHRALVSAHGWATDGLSPQDIEMLDETAKH
ISETERRSMLAERDTTDRYLASFMSERVGNEFSGRISGVARFGIFVKLDETAADGLVPIR
SLGREYFEHDADSQTLRGTDSGTVISLGQRVVVRLAETTPTTGGILLDLLELEDSKLQTR
PRQRKIASASNRRGPKKGKSRKVTRKRQ
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaattccttcacaggcggacattctcgaatggatccgcgcgcaccccgaaaaa
tcctcgaaacgagatattgccaaagcctttggcataaaaggtgctgcacgcatcgatctc
aaacagatgctgaaagagcttgaggccgagggccacctcatgcaaaggcggcggcggttc
aatgatcccaatagcttaccccccgtttccgttctgcaaatgctgggcccggactcgcaa
ggcgatatgttcgccgtgccactggaatgggaaggcacgggccatttgcccaaaatactc
atgcgcagccgtcaaggtgatccagctttgggacagggtgaccggcttttggcgcgactc
acccccgtacccgatgaagatagccatcaatatactggccaattgattcgcgcgattggg
accaatccaaaacgcctcttaggtattttccgcctcaccgcggaaggcggacgcattgtc
gcgattgataagggcgaaggcaaagagtggcttgttgctgcggatgcagcgggtgaagcc
aaagacggagaattggtcgaagccgaacaatccggtccgaaaggccgccttggcctgccc
cgcgcgcgtgtggtggagcggctaggagatccttctgcacccaaagccgtatcgctaatt
gccattcatcaacatggaattcccgacgcctttcccgatgcggtgatggcgcaagcggat
gcagccaaaccggcaacatcaaaaggccgcgttgatctgacagacctacctttgatcacc
atcgacccagccgatgcacgagaccatgatgatgcctgctgcgctcttctggatgaagat
cccaagaaccccggaggctttttgctttgggtcgccatcgccgatgtcgcccattatgtg
acagccggatcggctttggatgcagaagcacgcaagcgcggaaattccacctacttccca
gaccgcgttgtccccatgttgcctgaccgcctatcaggcgatctttgctcgctgcatgaa
ggggtcacaagaccctgcatcgcggtcgaaatgaaactctcatcaacaggcgaaaaactg
tcgcatcggtttgtgcgggggctgatgcgctcgccggcctcgctgtcctatgaggaggcc
caagcggccgtggatggggatccctccgaacgcgccgcacctttggttgacactgtgctc
tcgcccctatttggtgcctacgctgccctgaaacaggcacgcgaagcccggcagccgttg
gaactggacctgcctgaacgcaaaataattctatcagacagcggcaaggtcgcttcggtc
aatttttcagaacgcttggacgcccatcgcttgatcgaagaatgtatggtgctggcgaat
gtggcggcagcagaaactttgatcgccaagcaacagccgctattgttccgtgttcacgaa
gaaccaagccccgaaaagctagactctctgcgcgaaacggcaaaatctgtggggctggtc
ctggcaaaaggtcaggtattgcaaacgcggcatcttaatcaattattaaaggttgccgcc
ggaaaagatgaatcagaattaatcaatctttcaacattacgttccatgactcaagcctac
tatagttctcaaaacatgtcgcacttcggattggcacttcagaattatgcacattttaca
tcgcccatacggcgctatgcggatcttttgctgcaccgtgccttggtttcagcccatggg
tgggcaaccgatggcctgtcaccgcaggatatcgaaatgctagacgaaaccgccaaacat
atcagcgagacagagcgacgctcgatgctggcagagcgcgacacaaccgaccgttatctt
gccagtttcatgtcagaacgcgtgggaaatgaattcagcgggcgcatttcaggcgttgcg
cggtttggcatatttgtgaaactggatgaaacagctgcagatgggttggtgcctattcgc
tccttaggacgggagtatttcgaacatgatgctgacagccaaaccctacgcggtacggac
agcggcacggtcatcagccttggtcaacgtgtggttgtgcgattggcagaaaccacccca
accacagggggtatcttgctcgacttgttagagcttgaagattcaaagttgcaaacacgg
ccgcgacaacgcaaaattgcgtcagcaagcaaccggcgggggcccaagaagggcaaatcc
agaaaggttaccagaaaacggcaatga
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