Planktomarina temperata: RCA23_c00450
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Entry
RCA23_c00450 CDS
T03229
Symbol
yfhQ
Name
(GenBank) A/G-specific adenine glycosylase YfhQ
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCA23_c00450 (yfhQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c00450 (yfhQ)
Enzymes [BR:
ptp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
RCA23_c00450 (yfhQ)
DNA repair and recombination proteins [BR:
ptp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RCA23_c00450 (yfhQ)
Prokaryotic type
RCA23_c00450 (yfhQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_4
HhH-GPD
HHH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
AII85618
UniProt:
A0AAN0RG92
LinkDB
All DBs
Position
48220..49254
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AA seq
344 aa
AA seq
DB search
MNSTELLNWYDLHARELPWRVSPAARVAGQLPDPYRIWLSEIMLQQTTVAAVKAYFLKFT
AAWPTVVDLAAAEDADVMAAWAGLGYYARARNLLKCARVIVAEHGGQFPANRAALQNLPG
IGPYTSAAIAAIAFDHAETVVDGNVERVMARLFDLHAPLPQAKGALTSYAASLTPPARPG
DYAQAVMDLGATICTPKSPRCALCPWHDICAARKAGTAAELPKKLPKVKKPTRFGTAYVA
RRSDGAVLLEQRPERGLLGGMLGWPGSEWRETPLDAIPPIQADWVEAPGEVRHTFTHFHL
RLRVMVAQVDAPQTNQTFTAAENFRPADLPTVMRKIWSMAEAET
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaactgagcttttgaactggtatgatctccatgcacgggagttgccttggcgg
gtcagcccggccgcgcgcgtggccgggcagctgcccgatccttaccgtatttggctctct
gaaattatgttacagcaaaccactgtggcggcggtgaaggcctattttttgaagtttaca
gcggcatggcccacggtggtggatttggcggccgctgaagatgccgatgtgatggcagct
tgggcggggctgggctattatgcccgcgcgcgcaatttgttgaaatgcgcccgcgttatt
gtggcggagcatggtggacaattcccggcaaatcgcgcggccttgcaaaacctgccgggc
attggcccctataccagcgccgctatcgctgcgatcgcatttgatcatgcggaaacggtg
gtggatggcaatgttgagcgggtcatggcgcgtttgtttgatctccacgcgccgcttcca
caggcgaagggcgcgctgacgtcctatgccgccagtctaacccccccggcgcggcccggc
gattatgcacaagcggtgatggatttgggcgccacgatttgcacaccaaaatcaccgcgc
tgcgccctttgcccatggcatgacatttgcgcggcgcgaaaagcaggcactgcggcggaa
ttgccgaagaaattaccaaaggtgaaaaagcccacgcgctttgggaccgcttatgttgcg
cggcgcagcgacggggctgtcttgctggagcagcgcccagagcgcggcttgctgggcggc
atgttgggctggcccggcagtgaatggcgcgagacgccgctggatgcgatccctccgatc
caggcagactgggtagaggcaccgggtgaggtgcgccatacattcacgcatttccatctg
cgtctgcgggtgatggtggcccaggttgatgccccgcaaaccaatcaaacattcaccgcc
gctgagaacttccgcccggcagatcttcccaccgttatgcgcaagatttggagcatggca
gaggcagagacctag
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