Planktomarina temperata: RCA23_c01110
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Entry
RCA23_c01110 CDS
T03229
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03030
DNA replication
ptp03410
Base excision repair
ptp03420
Nucleotide excision repair
ptp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCA23_c01110 (polA)
03410 Base excision repair
RCA23_c01110 (polA)
03420 Nucleotide excision repair
RCA23_c01110 (polA)
03440 Homologous recombination
RCA23_c01110 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c01110 (polA)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c01110 (polA)
Enzymes [BR:
ptp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCA23_c01110 (polA)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RCA23_c01110 (polA)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RCA23_c01110 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCA23_c01110 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AII85678
UniProt:
A0AAN0RGD2
LinkDB
All DBs
Position
109753..112548
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AA seq
931 aa
AA seq
DB search
MAFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLQRYVENNTGPDAP
THVAVIFDHSGKTFRNDMYDLYKANRSATPEDLIPQFPLTRAATRAFNVACKEVEGFEAD
DIIATLACRARDAGGACTIISSDKDLMQLVGGGVVMLDAMKNKVIDRDGVVEKFGVAPER
VVDVQALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGGIKQPKRRESLMDNRA
QIELSKQLVQLECNMELDFSIEDLEVRDPDPQELLDFVAQMEFRTLSKRLADKLGVQAPV
IAEPEVQQAVIEAPAAAAFDTSKYETIRDAAALQTWIDRIYARGYVAVDTETTGLNEMRA
DLVGVSLCVQAGEAAYLPLAHRAGQSDDLFGTDALAEGQMDLDTALAMLKPMLEDSTILK
IGQNMKYDAKILARVGIQVAPIDDTMLMSYAQNGGLHNHGMDLLSERYLDHAPISIKTLL
GSGKSAITFDRVPIDEASLYAAEDADITLRLWQYLKPRLHLNRVTAVYESLERPLVPVLA
DMEMHGIKVDRDVLSRMSNGFAQKMAGLEAEIHEMAGRSFNVGSPKQLGEVLFDEMALPG
GKKGKTGAYATGVDVLEDLATEHELPGRVLDWRQLSKLKSTYTDALQDHIHPDTGRVHTS
YSIAGASTGRLASTDPNLQNIPIRTEEGRKIREAFVAETGKTLVALDYSQIELRILAHIA
DIPTLKQAFADGIDIHALTASQMFDVPLDQMTSEVRRKAKAINFGVIYGISGFGLARNLR
IPRAEAQAFIDTYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRRIHTPDIGAKGPHAGFA
KRAAINAPIQGTAADVIRRAMVRMPEAIAHLPAKMLLQVHDELLFEVEDGAVEALTQVAK
QVMERASLPVVKLDVPLIVEAGSGPNWAVAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcattcggtaaaggacatcacctgcatctgatcgacgggtcagccttcatctttcgc
gcctatcacgctttgccgccgctgacgcgcaaatcagatggtttgccggtgggcgctgtg
gccgggttttgcaacatgttgcaacgatatgtggaaaacaatactggccccgatgctccc
acccatgttgcggtgatctttgatcactctggcaagacatttcgcaatgatatgtatgat
ctgtacaaggcgaaccgttccgccacgccggaagatttgatcccacaattcccactcacc
cgcgcggcaacccgggcttttaatgtggcatgtaaagaggtcgaagggtttgaggcggat
gacatcatcgcaacattggcctgccgcgcgcgcgacgctgggggcgcgtgcaccatcatc
agctctgacaaggacttgatgcagctggtgggcggcggtgttgtgatgctggatgccatg
aaaaacaaagtgattgaccgagacggtgttgttgagaaatttggtgttgcccctgagcgc
gtggttgatgtgcaggcattggcaggggacagcgttgacaatgtgcccggtgcacccggc
attggcattaagactgcggccttgctgatcaacgaatatggctctctggaagagcttttg
gatcgcgcaggagggatcaaacagcccaagcgccgcgaaagcttgatggacaaccgggcg
cagatcgaactgtccaaacagctggttcagctggagtgcaatatggagctggatttctcc
attgaggatttggaggtgcgcgatcccgatcctcaagagcttttggattttgtggcacaa
atggaatttcgcaccttgagcaaaaggctggcggataaactgggcgttcaagccccggtt
attgccgagcccgaggtgcagcaggccgtgattgaggcccccgcggcggcggcttttgac
accagtaaatatgagaccatccgagatgcggcggctctgcaaacttggattgatcggatt
tatgcccgcggttatgtggccgtggatacggaaacaaccggtttgaatgaaatgcgcgcc
gatttggtgggtgtctccttatgcgtccaagccggtgaggcggcctatttgccgctcgcg
catcgcgcagggcagtctgatgatctcttcggcactgatgctttggcggagggccagatg
gatctcgataccgctctggccatgctcaagccgatgctggaagattccaccattctgaaa
attggtcagaacatgaaatatgacgccaagattttggcgcgggtcggcatccaagtggcg
ccgatcgatgacacaatgttgatgagctacgcgcaaaatggcggcttgcacaatcatggg
atggaccttttgagcgagcgttatctcgatcatgcgcccatctcgatcaaaacactgctg
ggcagtgggaaatccgcaatcacctttgaccgcgttcccattgatgaggccagcctttat
gcggcagaagatgccgatatcactctgcgcctttggcagtatctcaaaccgcgcttgcat
cttaatcgggtgacagcggtctatgaaagcctggaacgccccctcgtgccggtattggca
gatatggaaatgcacgggatcaaagtagaccgagatgtcttgagccgcatgtcgaatggt
ttcgcgcagaagatggcggggctggaggctgaaatccacgagatggccgggcgcagcttt
aatgtgggatcccccaaacagcttggtgaagtgctctttgatgaaatggcgcttcccggt
ggtaagaagggcaaaacgggcgcctacgccactggggttgatgttttggaagatctggcg
acggagcatgaattgcccgggcgggttttagactggcgtcaattgagcaaattgaaatcc
acttataccgacgcgctgcaggaccatattcatcccgatactggccgcgtgcacacgtcc
tattccatcgccggcgcgagcaccgggcgtttggcctcaactgatcccaacttgcaaaat
atccccatccggacggaagagggccgcaaaattcgggaggcttttgtagcggagaccggc
aaaaccttagtggctttggattattcacaaatcgagctgcgcattctcgcccatattgcc
gatattccaactctgaaacaggcctttgccgacggcattgatattcacgcgctgaccgca
agtcagatgtttgatgtgccgctcgatcaaatgacctctgaggtgcgccgcaaggcaaaa
gccattaactttggggtgatttatggcatttctggctttgggcttgcgcgcaatctgcgc
attccgcgggcggaggcccaggcgttcatcgacacatattttgagcgcttcccgggcatt
cgcacctatatggatgatacggtggctttcgccaaagaacatggctatgtgcaaacgctg
tttggacgccgcattcacacgcctgacattggggcgaaaggcccgcatgcaggttttgcc
aaacgcgctgcaatcaatgcgccgatccaaggcaccgcagcagatgtgatccgccgcgcg
atggtccgcatgcccgaagcgattgcgcatttaccggccaaaatgttgttgcaagtgcac
gatgaattgctgtttgaagttgaggacggtgcggtcgaggcccttacccaagttgccaaa
caggtgatggaacgggccagcttgccagtggtcaagctggatgtgccgttgattgtggag
gccggatctgggccaaattgggcggtcgcgcattag
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