Planktomarina temperata: RCA23_c03000
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Entry
RCA23_c03000 CDS
T03229
Symbol
hmrR
Name
(GenBank) HTH-type transcriptional regulator (copper efflux regulator)
KO
K19591
MerR family transcriptional regulator, copper efflux regulator
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptp03000
]
RCA23_c03000 (hmrR)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
ptp01504
]
RCA23_c03000 (hmrR)
Transcription factors [BR:
ptp03000
]
Prokaryotic type
Helix-turn-helix
MerR family
RCA23_c03000 (hmrR)
Antimicrobial resistance genes [BR:
ptp01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexPQ-OpmE [MD:
M00769
]
RCA23_c03000 (hmrR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MerR-DNA-bind
MerR_1
MerR
DUF2205
UBAP-1_UBA2
Motif
Other DBs
NCBI-ProteinID:
AII85864
UniProt:
A0AAN0RGS0
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Position
327811..328200
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AA seq
129 aa
AA seq
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MNIGEVAKMADLPIKTIRYYEEIGFIQPKRSANGYRSFRESDVHKLAFLGRARSLGFSIE
DCRALLQLYENDTRASADVKQIAQEHLTRIDAKVKELQAMRNTLSHLIEACAGDDRPTCP
ILSDLATLS
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgaatattggtgaagtggcaaaaatggcggacttgccgatcaaaaccattcgctactat
gaagaaattggctttattcagcccaagcgcagcgccaatggatatcgcagctttcgcgag
agcgatgtgcataaattggcatttctgggccgggcgcggtctttggggttttctatcgaa
gattgccgggccttgctgcaattatatgaaaatgacacgcgcgccagtgccgatgtgaag
caaattgcccaggaacatttgacgcgcatcgatgccaaggtcaaagaattgcaggccatg
cgcaacaccctatcgcatctgatcgaagcctgcgccggcgatgaccgccccacgtgccca
atcttgtccgatcttgcgacgctgagttga
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