Planktomarina temperata: RCA23_c04550
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Entry
RCA23_c04550 CDS
T03229
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c04550 (hup)
03036 Chromosome and associated proteins [BR:
ptp03036
]
RCA23_c04550 (hup)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c04550 (hup)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RCA23_c04550 (hup)
Chromosome and associated proteins [BR:
ptp03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RCA23_c04550 (hup)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RCA23_c04550 (hup)
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Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
AII86015
UniProt:
A0AAN0RH48
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All DBs
Position
488882..489214
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AA seq
110 aa
AA seq
DB search
MEIGAQGVGLVRRKYMSKPMTKTQLVAALAEKMGTDKKSAAASLDAICELITSEVSGGGA
VTLPGVGKIYCRERPERMVRNPATGESFKKDADKVVKMTIAKALKDSVNG
NT seq
333 nt
NT seq
+upstream
nt +downstream
nt
ttggagattggtgcccaaggtgttgggcttgttaggagaaaatatatgtcgaaacctatg
acgaaaacacaattggttgccgcattggcagagaaaatgggcacggataaaaaatccgca
gcggcctcgttggatgcgatctgtgagttgatcaccagcgaagtttccggcggcggcgct
gtgactttgccaggtgttggcaaaatctattgccgtgagcgtccagagcggatggtgcgc
aaccccgccactggtgaaagcttcaaaaaagatgcggataaagttgtcaaaatgaccatt
gcgaaagcgctcaaagacagcgtaaacggttaa
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