KEGG   Planktomarina temperata: RCA23_c08020
Entry
RCA23_c08020      CDS       T03229                                 
Symbol
fliA
Name
(GenBank) RNA polymerase, sigma factor for flagellar operon FliA
  KO
K02405  RNA polymerase sigma factor FliA
Organism
ptp  Planktomarina temperata
Pathway
ptp02020  Two-component system
ptp02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ptp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    RCA23_c08020 (fliA)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    RCA23_c08020 (fliA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptp03021]
    RCA23_c08020 (fliA)
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:ptp02035]
    RCA23_c08020 (fliA)
Transcription machinery [BR:ptp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RCA23_c08020 (fliA)
Bacterial motility proteins [BR:ptp02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    RCA23_c08020 (fliA)
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 PhyR_sigma-like HTH_23 UPF0122 KORA YqeY GerE 7TMR-HDED HTH_5
Other DBs
NCBI-ProteinID: AII86358
UniProt: A0AAN0RHM6
LinkDB
Position
complement(856023..856748)
AA seq 241 aa
MTVSKGYYQEQKPDPEDLIMSELQTVRKLAFYFYGRAKGAVEVDDLLQVGYIGLIDASQK
YVKKPGVTFSSYAKIRIRGSIVDHLRRSSNLCRTTIAMKQKVDKTILSLERKLQRAPSDD
EVAGILELTTEELRRWQQAFEANLHQSLDEMHDAHSIWFVSKEANPEESLSNNEMKRGLR
DQLAKLSEREALVMQLYYVEELNVYEIAEILGVTTGRVSQIKKSAIGHLREGMAEFLESP
S
NT seq 726 nt   +upstreamnt  +downstreamnt
atgactgtaagtaagggatattaccaagagcagaaaccggacccggaagatctgattatg
tcagaactgcaaacggtccgaaaactcgcgttttatttctatggacgagcaaagggtgcc
gttgaagtggatgatttactgcaggtcggatatattggcttaattgacgcaagccagaaa
tacgtcaaaaaaccaggtgtaacctttagcagctacgccaaaatccgtattcgcgggtct
atcgtagatcatttgaggcgcagctcaaatttatgtcgcacgacaatcgcgatgaaacaa
aaagtagataaaacgatcctaagcctagagcgaaagttgcaacgcgctccatcagacgat
gaagttgctgggattttggaattgacgaccgaagaattacgccggtggcaacaggctttt
gaggcaaatttacatcaatcgctagatgaaatgcatgatgcacattccatttggttcgtt
tccaaagaagccaatccggaagagtccttaagcaataacgaaatgaaaagaggcttgaga
gaccaattggcaaagctatcagagcgcgaagctttggtcatgcagctctactatgtagag
gaattgaatgtttatgagattgcagaaatccttggggtgaccaccggacgtgtctcacaa
atcaagaaatctgcgattggtcaccttagagaaggaatggccgaattccttgagtcgccc
agctaa

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