Planktomarina temperata: RCA23_c08130
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Entry
RCA23_c08130 CDS
T03229
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
ptp
Planktomarina temperata
Pathway
ptp02020
Two-component system
ptp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RCA23_c08130
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RCA23_c08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptp03000
]
RCA23_c08130
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ptp02035
]
RCA23_c08130
Transcription factors [BR:
ptp03000
]
Prokaryotic type
Helix-turn-helix
Other families
RCA23_c08130
Bacterial motility proteins [BR:
ptp02035
]
Flagellar system
Flagellar assembly proteins
Others
RCA23_c08130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
Mg_chelatase
AAA_5
AAA_7
AAA
AAA_2
AAA_16
AAA_19
HTH_30
AAA_3
Motif
Other DBs
NCBI-ProteinID:
AII86369
LinkDB
All DBs
Position
865619..866770
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AA seq
383 aa
AA seq
DB search
MNGKNDKLTKLTAHKNDSIIVGSSKPTMDMRHLIEIVASSNGPVLVCGPTGAGKELVAEE
IHTHSARSGKLIALNCAAIPGDLIESELFGYEKGAFTGADKQRIGRFEQSHRGTLFLDEI
GDMPLALQSKLLRVLENHSIQRVGGKSDVKLDLRIVCATHKNLQDMVEEGTFRADLFYRL
NVFPITVPPLKQRGEDVLELLTVLIDKRREQSPGVPLPVFSQNALTALMSYDWPGNVREL
RNVVERAFIIFSGAEVSGKHVRENLLTLRVPGVVPEEENNAMWEATRDLPGHATGQVFGS
DEAILPQPEDYRNWFEHDDHIDLRRHLRDIEVVLIEAALQETGGMVSAAADRLNIGRTTL
IQKMNKLMIAKDIKVSSPSPRHP
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtaaaaatgacaagttgactaagttaaccgcgcataaaaatgattcaatcata
gttggaagctcaaagccaacgatggatatgaggcatcttatagaaattgttgcttcttcc
aacggacctgtattggtctgtggtccaacaggagcaggtaaggagttggtggcagaagaa
attcatacgcacagtgcgagatcaggcaagttgatagcgctaaattgcgccgctattccg
ggtgatcttattgagtcagagttgtttgggtatgaaaaaggtgcctttaccggtgctgac
aaacaacgcattggtcgctttgaacaatcccaccgtggaacacttttcttagatgaaatc
ggagatatgccactcgctttacaatccaaattactgcgcgttttggaaaaccactcaatc
cagagagttggcggcaagagcgatgttaaattggatttaagaattgtctgcgcgacacat
aaaaatttgcaggatatggttgaggaaggtacatttcgtgcagatttattttatcgattg
aatgtcttcccgatcacggtgccacctttaaaacaaagaggtgaggatgttttggaattg
cttaccgtacttatagataaacggcgcgagcaatctccaggcgttcccctgcccgtgttt
tcacagaacgctttaacggccttgatgagttatgattggcccgggaatgtgcgcgaactt
agaaacgttgtggaacgggcttttataatcttttccggtgcggaggtgagtggcaaacat
gtccgcgaaaacctcttaacgcttcgggtgcctggcgttgttcctgaggaagaaaataat
gcgatgtgggaggcaacgcgtgatttaccaggtcatgcgacggggcaagtgttcggttct
gacgaggccatattgcctcaaccggaagactatcggaactggtttgaacatgacgaccac
atcgatttacgtcgccatttgcgcgacattgaagttgtgttgattgaggctgcgcttcag
gaaacaggggggatggtaagtgcagcagctgatcgacttaatattggtcgaaccacgctg
atacagaagatgaataagctgatgattgcgaaagatattaaagttagctctccttcgccc
aggcatccatga
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