Planktomarina temperata: RCA23_c09960
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Entry
RCA23_c09960 CDS
T03229
Symbol
rpoH1
Name
(GenBank) RNA polymerase sigma-32 factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptp03021
]
RCA23_c09960 (rpoH1)
Transcription machinery [BR:
ptp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RCA23_c09960 (rpoH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
GntR
Motif
Other DBs
NCBI-ProteinID:
AII86549
UniProt:
A0AAN0RHZ3
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Position
1064374..1065270
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AA seq
298 aa
AA seq
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MANYANLPAPTPDGGLNRYMQDIRKFPMLEPEEEYMLAKAWVERQDSGAAHKLVTSHLRL
AAKIAMGYRGYGLPQAEVISEANVGLMQAVKKFDPEKGFRLATYAMWWIRASIQEYVLRS
WSLVKMGTTSGQKKLFFNLRKAKSRIGAYDDGDLRPEQVARIATDLGVTETEVQSMNRRM
SGGDASLNVMVGSDGESATQWQDWLQDEDADQAGDYERDDEMSVRRDMLAEAMSVLNDRE
KDIITQRRLHDQPVTLEELSSQYDVSRERIRQIEVRAFEKLQNRMRELAQEKGLLREL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattacgcaaatttacctgcaccaacgccggatgggggattgaaccgctatatg
caggatatccgcaaattcccaatgctggagccggaagaggagtatatgttggccaaggct
tgggtggagcggcaagacagcggtgcggcgcataagttggtgacgagccacctgcgtttg
gcggctaaaatcgccatgggctatcgtggctatgggctgccgcaggcggaggtcatctcg
gaggccaatgtcggcttgatgcaggccgtcaagaagtttgacccggaaaaaggcttccgc
ttggccacatatgcgatgtggtggatccgggcgagcattcaagaatatgtgctgcgctct
tggtccttggtgaaaatgggtaccacgtccggacaaaagaagctgtttttcaatctccgc
aaggcaaaatcgcggattggcgcttatgatgatggggacttgcggcccgaacaggttgcc
cgcatcgcgactgatctgggcgtgactgaaaccgaagtgcagtcgatgaaccgccggatg
tctgggggcgatgcctctttgaatgtcatggtcggcagcgacggcgaaagcgcgacacag
tggcaagattggctgcaagatgaggatgccgatcaagcgggcgattatgagcgcgatgat
gagatgtctgtgcgtcgcgacatgctggctgaggcgatgagcgttttgaacgaccgcgaa
aaggacattatcacccaacgtcgcttgcacgatcagccggtgaccttggaggagctgtca
agccaatatgacgtgagccgcgagcgaattcgccagattgaagtgcgggcgtttgaaaag
ctgcaaaaccgtatgcgtgaattggcgcaggaaaagggcctgctgcgcgagttgtga
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