Planktomarina temperata: RCA23_c12550
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Entry
RCA23_c12550 CDS
T03229
Name
(GenBank) ATP-dependent helicase
Organism
ptp
Planktomarina temperata
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Histone_HNS_N
Motif
Other DBs
NCBI-ProteinID:
AII86802
UniProt:
A0AAN0VIA2
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Position
1367457..1370579
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AA seq
1040 aa
AA seq
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MQIEFNYSNEGVIINFLGIRKGFLKFFLSSTIKTSLSQLSKEDQNLALAIADLKFCADNI
QSQLDISEDRLQFSHEVAASISSQTAKKLGLPPISHLTLETDVVSIPGHDSFQLKYNWSL
NGQKQNPKRIGAILQTSEGLRRIPFWLLQAIDLAETELAQKSLEHHWHQMAKFRKALEPD
FDTAHSSTSSVEMSQFLSNLKVKISDGFSILPDQDETTGSFEVIPFSNQHIDDQLISSET
TVTVAMSELDQDELQNFQDRFERKGSLSAYKIGDGSYMVVEPSSKPALDVMANMQSASIE
ERREFIKNPRLKINEAIESYLSKNGKLDGLSDAQKEETIEQASFPVFIETAEYSERVTGK
TVYMGNSLPGGDGSATTWLPEIFDEPQRDFLKDLPINDLEEVKSKLKTAVDLGKDIIVFR
GNEIPASEASIEAINALLASKEDTETHPAEPSEVPGGDTADGPIILDVENNFEQLKWRAE
ISPRSVTIPMAAPKNITTQLRPHQEDSLDWQINAWEAGLPGVLNADEQGLGKTLQTLSFL
AWMRAQLSSDKEAKAKGPVLIVAPTSLLVNWEQEVENHMSSGGLGQLVRLYGTATSARKR
IGANGLDTKTGEDLLDLDFLIEATKQGQGHTFWVLTTYTTLTNYQHSLGRIPFSVAVFDE
IQAMKNPGSLRAFAGTAMQADFRIGLTGTPIENSTSDLWAILDQISPGRLIPLSKFRQEF
SAPNQDKMQMLYELIFEDVDGLPPMAIRRLKDDVATELPKKKRILHAEAMSEHQATSYEE
ARGKLVTGKKGAALKMLHHIRSVSVHPNISSELIADEYISLSARLKSTFEILDRIHSKNE
RALVFIEHIQMQYRFIELLKARYDLENIDLINGKTPIKQRQKIVNRFQSHLKNDRGFDVL
VLGPKAAGTGLTLTAATHVIHLSRWWNPAVEEQCNDRVHRIGQTKPVTVHVPLSVHPEYE
EKSFDLLLHSLMTWKRKLASSALWPMGDTEADMQKLQELLGSEATSKGDKDFVKNSVIKM
FERDEVVPLEIVDDKTFVYD
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatagagttcaattactccaacgaaggcgtaatcattaattttttggggatccgt
aaaggatttctcaagttttttctcagtagcactattaaaactagcctgtcacagttaagt
aaagaagatcaaaaccttgctttagcgatagcggatctaaagttttgcgccgataacatt
caatctcagttggatataagcgaggataggcttcaattttcgcacgaggtagctgcgtca
atatcgtctcaaactgcaaaaaaattaggcctgccacctatcagtcacctcaccttagaa
actgacgttgtttcaattcctggtcatgatagttttcaattaaaatataactggtcatta
aatggtcaaaagcagaacccaaaaagaataggtgctatactgcaaacctctgaaggcttg
aggcggattccattttggttgcttcaagcaatagatttagctgaaacagagttagcgcag
aagtctttagagcatcattggcaccaaatggctaagtttcgaaaagcacttgagccggat
tttgatacagcacacagctcgactagttcggtcgaaatgagtcaatttttatcaaatctt
aaggtgaagatttcagatggtttctcgatactgccagatcaggatgaaaccactggaagc
tttgaagttattccattttcaaaccaacatattgacgatcagttaatcagctcggaaaca
acagtaactgttgccatgagtgagctcgatcaagatgaactgcaaaactttcaagatcgg
tttgagcgcaaaggttctttgagcgcttataagattggtgatggaagctacatggtggta
gagccatcttctaagccagcacttgatgttatggcgaatatgcaatcggcttctattgaa
gaaagacgggagtttatcaaaaacccccgcttaaaaattaatgaagcaattgaaagttat
ctaagtaagaacggtaagttagacggattgtcggatgcccaaaaagaagaaacaattgag
caggcctcatttcccgtttttattgagacggcagaatattctgaacgtgtcactggtaag
acagtttatatggggaattcactacctggaggtgatggatctgcaacaacttggctaccg
gagatttttgatgaacctcaacgagactttttaaaagatctaccaatcaatgatctagag
gaggttaagtcaaaattaaagacagcggtcgatttaggaaaagatattattgtttttcga
ggtaacgaaataccagcatctgaagcaagcattgaagcaataaatgcgcttttggcctca
aaggaagatacagagactcatcccgctgagccttcagaagttccaggtggagatacagca
gatgggcccataatcttagatgttgaaaataattttgagcagttgaaatggagagcagag
attagtcccagatcggttacaattccgatggctgcaccaaaaaatattacaacgcagctg
agaccgcatcaggaagatagtttggattggcagataaatgcttgggaagccggtttgccg
ggagttttaaatgcagatgagcagggactgggaaagactctgcaaacactttcatttctg
gcctggatgagagcgcaattaagtagtgataaagaagccaaggcaaaaggtccggttttg
attgttgctccaacctcgcttctagtaaattgggaacaagaagtagaaaaccatatgagc
agtggaggtcttggccagttggtgagactctatggcaccgcaacgagtgcgagaaaacgt
attggtgctaatggtttagatactaaaactggtgaagatttattagatcttgatttcttg
attgaagccaccaaacagggacaaggccatacattttgggttctaacgacttacacgaca
ctgacaaactaccaacattcattaggtcgtatccctttctctgtagcggtttttgacgaa
atccaggccatgaaaaacccaggatcgttgcgggcttttgcaggtacagctatgcaagcg
gatttccgaattggattgacgggaacgccaattgaaaattccacaagtgatctttgggcg
atactagatcagatatcccctggtcgattaattccactcagtaagtttagacaagagttt
tcagcaccaaatcaagacaagatgcaaatgttgtatgaactaatttttgaagatgttgat
ggtttgccgcctatggcaattcgtcgattaaaggatgacgttgcaacagaacttcctaaa
aagaaaagaattttgcacgctgaggcgatgtcagaacaccaagccacttcatatgaagaa
gcgaggggcaaattagtaactggaaagaaaggcgcagcccttaaaatgctgcatcatatt
agatctgtatcggtacatcccaatatctcctcagaacttatcgctgatgaatatataagc
ttgtctgctcggctaaagtctacctttgaaattcttgatcgtattcattcaaaaaacgag
agagctttggtttttatagaacatatacaaatgcagtatcggttcattgagctattaaag
gctaggtacgatttagaaaacatagacctaataaatggaaaaacaccgattaaacaacgc
caaaaaatagttaaccggtttcaaagtcatttgaaaaatgatcgtggttttgatgtttta
gtgctaggtccaaaggctgcaggaaccggtttgacgttaactgccgctactcatgtcata
catttatcgagatggtggaatcccgccgttgaagaacaatgcaatgatcgggttcatcgc
attggacagacaaaacctgtaacagttcacgtgccgttatcagtgcatccagaatacgaa
gaaaaatccttcgatttgctacttcacagcctaatgacttggaagagaaaattggctagt
tctgctctttggccaatgggtgacacagaggccgacatgcaaaaactgcaggagttactc
ggatcagaagcgacttctaagggcgacaaagatttcgtaaagaattcggttatcaaaatg
tttgagcgagatgaagttgttcctttggagatagttgacgataagacatttgtttatgac
taa
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