Planktomarina temperata: RCA23_c13230
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Entry
RCA23_c13230 CDS
T03229
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptp03016
]
RCA23_c13230 (rnd)
Enzymes [BR:
ptp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RCA23_c13230 (rnd)
Transfer RNA biogenesis [BR:
ptp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RCA23_c13230 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AII86866
UniProt:
A0AAN0RIN1
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Position
1427543..1428700
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AA seq
385 aa
AA seq
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MQTLTTQAELEAFCTRAQGYPYVTIDTEFLRERTYYSKLCLLQMAVPGENEADAVLVDPL
SSEMSLEPLYRLFRDTSVVKVFHAARQDLEIFWNDAEIFPTPLFDTQIAAMVCGFGEQVG
YETLVRKIVKQQVDKSSRFTDWSRRPLTEAQKIYALADVTHLRGVYEFLKAELERSGRTA
WVVEETQSLTDPAIYDVVPSEAWRRVKTRTNSNKFLAYLRELAAFRESYAKTRNIPRNRV
FKDDAMVELASTKPTTQEDLSKSRLLLREARKGDIAEGILNAIKTVNAMDADSYPRLPKV
NDKLQVNPALADLLRVLLKAKSERSDVAQKMIASTAELDALAAGQRDVPSLKGWRMDVFG
SDALRLCEGKVGLAVKGNKVKLFEL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacattgaccacacaagccgagcttgaagccttttgcacaagggcgcagggctat
ccctatgtgaccatcgacactgaatttctcagagagcgcacctattattctaagctctgt
ttactgcaaatggcggttccgggggagaatgaggcggatgctgttttggtcgatcctttg
tcttctgagatgtcgcttgagccgctctaccgcctgtttcgtgacacctctgttgtgaaa
gtcttccatgcggcccgtcaagatcttgaaattttttggaatgatgctgaaatttttccg
acccccctgtttgatacgcaaatcgcggcgatggtttgcggctttggggagcaggtgggc
tatgagactttggtgcgcaaaattgtcaaacaacaggtggacaaatcttcgcgcttcacc
gattggtcgcgccgcccgctgaccgaggcccaaaagatctatgcgctggcggatgtgacc
catttgcggggggtctatgagtttttaaaagcggagttggagcgcagcgggcgcacggct
tgggtggttgaggaaacgcaatctttgacggatcctgccatttatgatgtcgtgccctct
gaggcatggcgccgggtgaaaacacggaccaactcaaataaatttcttgcctatcttcgc
gaattggccgcctttcgggaatcttatgcgaagacgcgaaatattccgcgcaatcgggtg
tttaaagatgatgcgatggtcgaattggcctccaccaaacccaccacacaggaagatttg
agcaaatcgcgcctgctgctgcgcgaagcgcgcaagggtgacatcgctgagggaattttg
aacgcgatcaaaacggtgaatgccatggatgcggacagctatccaaggttgccgaaggtg
aatgacaagctccaggtcaatccggcgttggccgatcttcttagggtgttattgaaagcc
aaatctgaacgctccgatgtggcgcaaaagatgatcgccagcacggcagagctggatgct
ttggccgccgggcaacgagatgtgccgtctttaaagggctggcgcatggatgtctttggt
tcggatgctttgcggctttgcgaaggcaaggttggcttggccgtgaagggcaataaagtg
aaactgtttgagctgtga
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