Planktomarina temperata: RCA23_c15800
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Entry
RCA23_c15800 CDS
T03229
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
ptp
Planktomarina temperata
Pathway
ptp02024
Quorum sensing
ptp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA23_c15800 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RCA23_c15800 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptp03019
]
RCA23_c15800 (hfq)
03036 Chromosome and associated proteins [BR:
ptp03036
]
RCA23_c15800 (hfq)
Messenger RNA biogenesis [BR:
ptp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RCA23_c15800 (hfq)
Chromosome and associated proteins [BR:
ptp03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
RCA23_c15800 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
AII87117
UniProt:
A0AAN0VIL7
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All DBs
Position
1701080..1701313
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AA seq
77 aa
AA seq
DB search
MASDKQNLQDAFLNQVRKTKVPVTIFLINGVKLQGVVTWFDNFCVLLRRDGASQLVYKHA
ISTIMPAQPISLYDGEE
NT seq
234 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgataaacaaaacttacaagacgcatttctcaatcaagtgcgcaaaaccaag
gttcctgtcaccatctttttgatcaatggcgtgaagctgcaaggcgttgtcacatggttt
gacaatttctgcgtgctcttgcgccgcgatggggcatcgcaattggtttataaacatgcg
atttcaaccattatgccagcgcagccaatttctctttatgacggtgaagaatag
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