KEGG   Planktomarina temperata: RCA23_c15800
Entry
RCA23_c15800      CDS       T03229                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ptp  Planktomarina temperata
Pathway
ptp02024  Quorum sensing
ptp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RCA23_c15800 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RCA23_c15800 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptp03019]
    RCA23_c15800 (hfq)
   03036 Chromosome and associated proteins [BR:ptp03036]
    RCA23_c15800 (hfq)
Messenger RNA biogenesis [BR:ptp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RCA23_c15800 (hfq)
Chromosome and associated proteins [BR:ptp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RCA23_c15800 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AII87117
UniProt: A0AAN0VIL7
LinkDB
Position
1701080..1701313
AA seq 77 aa
MASDKQNLQDAFLNQVRKTKVPVTIFLINGVKLQGVVTWFDNFCVLLRRDGASQLVYKHA
ISTIMPAQPISLYDGEE
NT seq 234 nt   +upstreamnt  +downstreamnt
atggcttccgataaacaaaacttacaagacgcatttctcaatcaagtgcgcaaaaccaag
gttcctgtcaccatctttttgatcaatggcgtgaagctgcaaggcgttgtcacatggttt
gacaatttctgcgtgctcttgcgccgcgatggggcatcgcaattggtttataaacatgcg
atttcaaccattatgccagcgcagccaatttctctttatgacggtgaagaatag

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