Planktomarina temperata: RCA23_c16590
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Entry
RCA23_c16590 CDS
T03229
Name
(GenBank) HhH-GPD superfamily base excision DNA repair protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCA23_c16590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c16590
Enzymes [BR:
ptp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RCA23_c16590
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RCA23_c16590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH_5
DUF977
Motif
Other DBs
NCBI-ProteinID:
AII87195
LinkDB
All DBs
Position
complement(1784783..1785406)
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AA seq
207 aa
AA seq
DB search
MDIITISSPADIDHAVAQLNIPQFNVIYEKCSPIPLRCKPPGFASLLQAIIGQQVLVASA
AAIWERIQAAGLCRAAAMAQASTEDLARLGLSRPKIRYAKALALSGLDYEGLAALSDAEV
LSRLTAITGIGRWTAEVYALQALGRADVFPHGDLALQEAARQVFHLPKRPSEADMRALAE
NWAPFRAVAARLLWAYYKDHKSREGIG
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atggacataataacgatctccagtccggctgatattgatcacgctgtcgcccagctcaac
attccgcaattcaatgtcatttatgaaaaatgcagccccattcccctgaggtgcaaaccg
cccggttttgccagcttgctgcaggctatcatcggtcaacaagtcttggtcgcctctgcg
gctgcgatttgggagcgtattcaggcggccggcctgtgtcgtgcggccgcaatggcgcag
gccagcacggaagacctggcgcgcttgggcctgtctcgccccaaaatccgctatgcgaag
gccttggcgctgagcgggcttgattatgagggtttggcggctttgtccgatgcggaggtg
ctgtcccgcctgaccgctatcacaggcatcgggcggtggaccgcggaggtttacgcattg
caagccctgggccgggcggatgtgtttccacatggggacttggccctccaagaggcggca
cggcaggtgtttcatctgccgaagcgccccagcgaggctgatatgcgcgccttggctgaa
aattgggcaccgttcagagccgttgcagcgcgtctgttatgggcctattacaaagatcac
aaatcgcgagaggggataggatga
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