Planktomarina temperata: RCA23_c19490
Help
Entry
RCA23_c19490 CDS
T03229
Symbol
topA
Name
(GenBank) DNA topoisomerase TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c19490 (topA)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c19490 (topA)
Enzymes [BR:
ptp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RCA23_c19490 (topA)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Topoisomerases
RCA23_c19490 (topA)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCA23_c19490 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AII87480
UniProt:
A0AAN0RJS1
LinkDB
All DBs
Position
2087889..2090483
Genome browser
AA seq
864 aa
AA seq
DB search
MAVVVVESPAKAKTINKYLGPGFTVLASYGHVRDLPPKDGSVDPENEFEMLWEVGAASKK
HVKAIADALKDDNELILATDPDREGEAISWHLQETLTKRRAIKKDTPVSRVVFNAITKIA
VTEAMKNPRQVDMELVEAYLARRALDYLVGFKLSPVLWRRLPGAKSAGRVQSVCLRLIVD
REMEIEAFNPREYWTVGASLSTPRGQQFDARLTSLGGKRLDKFDLANETEAELAVQAVRS
RDLTVTSVEAKPANRNPSAPFMTSTLQQEASRKFGMGARQTMSAAQRLYEAGLITYMRTD
GIDMAPEAVQAARAVICERYGAQYVPEQPRLYKNKAKNAQEAHECIRPTEMGQAPDSLSI
SDADQKKLYDLIWKRTVASQMAAARLERTTVEIESSDGQVGLRATGQVMLFDGFMRVYEE
GRDDTVVDEDDKRLPQISAADPLAKKSVTPEQHHTQPPPRYTEASLVKRMEELGIGRPST
YASVVTTIQDRDYVRKEKNRLIPEDKGRLVTVFLSSFFRQYVGYEFTANLENELDDVSAG
DREYRTVLSRFWKDFKVAIDEAMDQSITEVLEKINDVLEPHLFPMEEPGVDPRVCKSCGN
GRLSMRTARSGGAFIGCSNYPECRFTRPFGPPGTESSAIGPDGQLLGHVGADPISLRDGR
YGPYVQRGTVTEENPKPPRMSIPKSWSLDELTFEKAVQLLSLPREIGPHPEDGVMIESSI
GRFGPYVKHGTLYANIGDIDEVWSIGMNRAVEELAKKAARSGRGAAAKPLHELGEHPSEG
GPVNVMDGRYGPYVKWGKVNATIPKEIEPAQVTMELAVDLIAQKAPAKKKKAAAKKKPTA
KKTTAKKPTTKKSAAAKKAPAKKD
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgttgttgtagaatctcctgctaaggcaaagacaataaacaaatatcttgga
ccaggcttcactgttcttgcctcttacggtcacgtgcgtgatttgccgcccaaagatggc
tcggtggatcccgagaatgaatttgagatgctttgggaggttggcgcggccagcaaaaaa
cacgtcaaggccattgccgatgccctcaaagacgacaatgagctgatcctagcgaccgac
cctgaccgcgagggcgaagcgatcagctggcatttgcaagagacgctcaccaagcgccgc
gcgatcaaaaaagacacgccggtatcccgtgtggtgttcaacgccatcaccaagatcgcc
gtcaccgaagccatgaagaatccgcgtcaagtggatatggaattggttgaagcctatttg
gcccgccgcgccctggattaccttgtgggcttcaagctctcccccgtgctctggcgtcgc
ttgccgggggcgaaatcggctgggcgggtgcaatcggtctgcctgcggctcatcgttgac
cgcgaaatggaaattgaggcattcaatccgcgtgaatattggaccgtcggtgccagtctg
agcaccccgcgcggccagcaatttgacgcgcggctgaccagtctgggcggcaagcgtctc
gataagtttgatctggcgaatgaaaccgaggcggaattggcggttcaggcggtgcggagc
cgggatctgaccgtcacgtcggtggaagccaaacccgcaaatcgcaacccctcggccccc
ttcatgacctcgaccctgcagcaagaggcaagccgcaaattcggcatgggcgcccggcaa
accatgtcggccgcacagcgcctttatgaggctggcttgatcacctacatgcggaccgat
gggatcgatatggcgccagaagcggtgcaagccgcccgcgccgtgatctgtgaacgctat
ggggcgcaatatgtgccggagcaaccgcggctgtataaaaataaggcaaaaaacgcccaa
gaggcgcatgaatgtattcgccccaccgaaatgggccaagcccctgacagcctatcgata
tccgacgctgaccaaaagaaactctatgatctgatctggaaacgtacggtcgcaagccaa
atggcagcggcccgtttggagcgcaccacggttgaaattgaatcaagcgatgggcaggtc
ggtctgcgcgccaccgggcaagtgatgctctttgatggcttcatgcgggtctatgaggaa
gggcgtgacgacacggttgttgacgaagatgacaagcgtttgccacaaatcagcgccgcc
gatcccctggctaaaaaatctgtcacccctgagcagcatcatacccagccaccaccgcgc
tacaccgaggccagcttggtcaagcgtatggaagagctgggcattggccgcccctccacc
tatgcctcggtcgtcaccacaatccaagatcgcgactatgtgcgcaaagagaagaaccgt
ctgattcctgaggataaggggcgtttggtgactgttttcctcagcagtttcttccgccaa
tacgtcggctatgagttcacggccaatttggaaaatgaattggatgacgtttcggccggt
gatcgcgaataccgcacggttttgagtcgtttctggaaggacttcaaggtcgcgattgac
gaggcgatggatcaatccatcactgaagttcttgaaaaaattaacgatgtccttgagccg
catctttttcccatggaagagcccggggttgatccacgcgtctgcaaaagctgtggcaat
gggcgtttgtccatgcgcacagcccgatctggtggcgcatttatcggctgttccaactac
ccagaatgccgctttacccgcccattcggaccgcccggcaccgaaagcagcgccatcggt
cccgatggccagctgctcgggcatgttggcgcggatcccataagcctgcgcgatgggcgc
tacggcccctatgtgcagcgcggcactgtcacggaggaaaaccccaagccaccgcggatg
tccattccgaaaagctggtccttggatgagttgacctttgaaaaggccgtgcagctttta
tccctaccccgcgaaattggcccgcatccggaagatggggtgatgatcgaatcttcaatc
gggcgcttcggcccctatgtgaaacacggcacgctctacgccaatatcggcgatatcgac
gaagtgtggagcatcggcatgaaccgggccgtggaagaattggccaaaaaggctgcgcgg
agtggacggggcgcggccgccaagccgctgcatgagttgggtgaacaccccagcgaaggc
ggcccggtcaatgtcatggatgggcgctatggtccttatgtgaaatggggcaaagtgaat
gccaccattccaaaagagattgagccggcccaggtcaccatggaactcgcagtggatctg
attgcgcaaaaagcgcctgccaaaaagaagaaagcggcggccaagaaaaaacctaccgcc
aaaaaaacaaccgccaaaaagccaaccaccaaaaaatccgctgcggctaaaaaagcgcct
gcaaaaaaggattaa
DBGET
integrated database retrieval system
