Planktomarina temperata: RCA23_c20210
Help
Entry
RCA23_c20210 CDS
T03229
Name
(GenBank) putative tetracycline resistance protein, class C
KO
K08151
MFS transporter, DHA1 family, tetracycline resistance protein
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ptp02000
]
RCA23_c20210
01504 Antimicrobial resistance genes [BR:
ptp01504
]
RCA23_c20210
Transporters [BR:
ptp02000
]
Major facilitator superfamily (MFS)
Drug transporters
Drug:H+ antiporter-1 (12 spanner) (DHA1) family [TC:
2.A.1.2
]
RCA23_c20210
Antimicrobial resistance genes [BR:
ptp01504
]
Gene variants
Tetracycline resistance genes
Transporters
RCA23_c20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFS_1
Sugar_tr
TRI12
Motif
Other DBs
NCBI-ProteinID:
AII87552
LinkDB
All DBs
Position
2162268..2163494
Genome browser
AA seq
408 aa
AA seq
DB search
MNKPLAFTFIIVTLTIDAMGIGLIIPVMPDLLQDIEGGDLGHAAIWGGILSMVFALMQFL
FGPTIGSLSDRYGRRPVLLVSLLVIAVDYVVMGLAHSIWLLVLTRVIGGIAAATQATAAA
FISDISTAENRSANFGILGASFGVGFVLGPLIGGLLGEYGFRVPFFAAAGLASLNLLLGY
FVLPETVSKELRRPFDPARANPLGALVQIRKIPGLARFLLVFFLYEFAFYSYPAIWVYYA
KAQFHWEPGMVGLSLASFGISVAVVEGLLIRRILPWLGERRTIVIGFMFNIAMFTALGFL
TSGFWALIIAPFSALGSVVVPAMRGIMANKAAANQQGEVQGIIASTQSLAVIFAPLVLTY
VFYLATRPGGPVFLPGAPFLLAAAVVAITLTLFTTRPRGSISGQNSTR
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacctctggcctttaccttcatcattgtcaccctgacaattgatgccatgggc
attggcctgatcattcctgtgatgcccgatctgttgcaggacattgaaggcggagatctc
ggccatgcggccatttggggcgggattctctccatggtcttcgccttaatgcaatttctt
tttggtcccaccatcggctcgctaagtgaccgatacgggcgcaggccggtgctgctggtc
tctttgctggtcatcgccgtggattatgtcgtcatggggctggcccattcgatctggctg
ctggttctgacccgcgtcattggcggcatcgccgccgcgacccaagccaccgctgcagcc
ttcatctcggacatctcgaccgcagagaaccgctccgccaatttcggcattctgggcgcc
tcctttggggttggctttgtactgggcccgctgatcggtggtcttttgggcgaatatggc
ttccgcgtcccgttttttgcggccgccgggctggccagcctcaacctcctgttgggatat
tttgtattgcccgaaacggtgagcaaagagctgcgccgcccgtttgatccggcccgggcc
aatcctttgggcgcgctggtgcaaatccgtaaaatccccggcctggcgcgatttttactg
gtattttttctctatgaatttgccttttactcctatccggcgatttgggtgtattacgcc
aaagcacagttccattgggaacccggcatggtcggcctctctttggcctccttcggcata
tcagtggccgtcgtcgaaggtctgttgatccgcaggatcttgccctggcttggtgagcgg
cgcaccatcgtcattggctttatgttcaatatcgccatgtttaccgctttgggctttctc
acctctgggttttgggcacttatcatcgcgcccttttccgcgcttggctcggttgtggtg
cccgccatgcgcggcatcatggccaataaagcggcagccaatcagcagggggaagtccaa
ggtatcatcgcctcaacccaatctctggcggtcatttttgccccgttggtgctgacctat
gtgttctatctcgccacgcgtcccggcgggccggtctttttgccgggtgcgccgtttctt
ctggccgcggccgtggtggcgatcacgctgaccctctttaccacccggccaaggggcagc
atctccgggcaaaattccacccgttaa
DBGET
integrated database retrieval system
