Planktomarina temperata: RCA23_c21060
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Entry
RCA23_c21060 CDS
T03229
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA23_c21060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptp03019
]
RCA23_c21060
03009 Ribosome biogenesis [BR:
ptp03009
]
RCA23_c21060
Enzymes [BR:
ptp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RCA23_c21060
Messenger RNA biogenesis [BR:
ptp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCA23_c21060
Ribosome biogenesis [BR:
ptp03009
]
Prokaryotic type
rRNA helicases
RCA23_c21060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
ThylakoidFormat
Motif
Other DBs
NCBI-ProteinID:
AII87637
UniProt:
A0AAN0VIX4
LinkDB
All DBs
Position
complement(2249745..2251712)
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AA seq
655 aa
AA seq
DB search
MKQALADALKKRGYDTLTPVQLAVTAPELAQADLLVSAQTGSGKTVGFGLAIGDSLLGSN
EVFDRASHPLALVIAPTRELALQVKRELQWLYGEAQVTMASCVGGMDMRDERRALARGAH
IVVATPGRLRDHIMRGSIDLSELRAVVLDEADEMLDLGFKEDLEFILGHAPEMRRTLMFS
ATVPKSIATLAKSYQRDAQRVSTVAEKSQHTDIEYRALNVAARDMENAIINVLRFYEAPN
ALVFANTRVMVNRLTTRLSNRGFSVVSLSGELSQAERSHALQAMRDGRARICVATDVAAR
GIDLPNLDLVVHAELPSNFETLMHRSGRTGRAGRKGISALIVPPSVRRKAERILQGAKVK
AEWTVPPSAEEVTAKDRARLLEDPAWHEEISATDQVVVDELLSHFSPAQVAAAFLRVYTA
KQSAPEELLAVDAREAKEAKPRRVADFGPTVWFSIPGGRASGTLPGRLLPMICNAGGLTK
HDIGAIKIHPDASFFEVKLSSVEGFKKALGPNMTVEDDAVVSELKAPPADVSYERSSAPK
PRADKKRPIEKPSGPIDWNDAPSPKTRKPKTGDGKPKFKSKTAAQSRPDGVVESFKKKTG
SGKPGGGKPSVGKSGGKPGSKPAAKAGAGKPKGGKPSARPDKHKFDPGKPKRKSS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaagctctagctgacgcgctgaaaaagcgcggctacgacactttgactcccgtt
caattggccgtcaccgcgccagaactggcacaggcggacctgctggtctcggcgcaaacc
ggatctggtaagacggtcggctttggtctggccattggcgatagtcttttgggaagcaat
gaggtgtttgaccgcgcgtcgcaccctttggctttggtcattgccccaacccgtgagctg
gccttgcaagtcaagcgcgagctgcaatggctttatggcgaagcgcaggtgacaatggcc
tcttgcgtgggcggtatggatatgcgcgatgagcgccgggctttggcccgcggggcgcat
attgttgtggccacgccagggcgtctgcgcgatcacatcatgcgcgggtcgattgattta
tctgagctgcgggcggtggtgctcgatgaggcggatgaaatgctcgacttgggcttcaag
gaagatctggagttcatccttggtcacgcgcctgagatgcgccgcactttgatgttttcc
gccactgtaccaaaatccatcgccactttggcaaaatcctaccaaagagacgcacagcgc
gtgtcgaccgttgcggagaagtcccagcacacggatatcgagtaccgcgccttaaacgtg
gcagcgcgggatatggaaaatgcaatcatcaacgtcttgcgcttttatgaagccccaaat
gctttggtctttgccaatacgcgggtcatggtcaatcgtttgaccacgcgcctgtcgaac
cgtggtttttctgtggtcagcctttcgggggaattgagccaggcggaacgctctcatgcc
ttgcaggccatgcgagatggccgggcgcggatctgtgtggccaccgatgtggcggcgcgg
gggattgaccttccgaatttggatttggtggtgcatgcggaattgccgagcaattttgaa
actttgatgcatcggtcaggccgtacgggccgggccgggcgcaaagggatttctgcactg
attgtgccaccctccgtgcgccgcaaggccgagcgcattttgcaaggtgcgaaggtgaaa
gcggaatggaccgtgccgccctccgccgaagaggtgaccgcaaaggatcgggcccggctt
ttggaagatcccgcctggcatgaggaaatttcagcaaccgatcaggtggtggttgatgag
cttttgtcccatttctccccagcccaggtggccgcggcgtttttgcgggtctatacggcc
aagcaatcggcccccgaagagctcttagcggtggatgcgcgcgaggccaaagaggccaag
ccacgcagagttgcagattttggcccaactgtctggttctccattcccggtggccgtgcc
tctggcacattgcccggtcgtcttctgccgatgatttgtaacgccggtgggttgaccaaa
catgatattggcgcaatcaaaattcatcccgatgcctcattctttgaagttaaactctcc
agtgttgaggggttcaagaaagccttgggcccgaatatgaccgttgaagatgatgcggtt
gtgagcgaacttaaagcgccaccggctgatgtgtcctatgagcgatccagcgcgccaaaa
cctcgggcagataaaaaacggccgatcgaaaagcccagcggaccgatagattggaacgat
gcgccatcacccaaaacgcgtaagcccaaaacgggtgacggcaaaccaaaatttaaatcc
aaaaccgcagcgcaaagccgccccgacggggtagttgagagttttaagaaaaaaactgga
agcgggaaaccgggcgggggcaaaccctctgtgggaaaatcgggtggcaagcccggctca
aagccggcagcaaaagcaggcgcgggcaagcccaaagggggcaagccaagcgcccgcccg
gataagcataagtttgatcctggcaagccgaagcgtaagtcatcctaa
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