Planktomarina temperata: RCA23_c21140
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Entry
RCA23_c21140 CDS
T03229
Symbol
dnaE2
Name
(GenBank) DNA polymerase III 1 alpha subunit DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03030
DNA replication
ptp03430
Mismatch repair
ptp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCA23_c21140 (dnaE2)
03430 Mismatch repair
RCA23_c21140 (dnaE2)
03440 Homologous recombination
RCA23_c21140 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c21140 (dnaE2)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c21140 (dnaE2)
Enzymes [BR:
ptp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCA23_c21140 (dnaE2)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RCA23_c21140 (dnaE2)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RCA23_c21140 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AII87645
UniProt:
A0AAN0RK34
LinkDB
All DBs
Position
complement(2258738..2262238)
Genome browser
AA seq
1166 aa
AA seq
DB search
MRENPKFIHLRVHSEYSLLEGAVRLKKLPDLAVSMGMPAIAVTDTNNMFCALEFSEAASK
AGIQPIIGCQVDMAYDPAPATEKPRAPAALVLLAQNERGYENLMALNSCLYLDSDGTLPQ
VQMAQLAAHAEGVICLTGGPNGPLGKLLQNGQTAKAQALLEGLAQAFGDRLYVELQRHPS
EDGRMPDAETLSERGLVEMAYAMDLPLVATNDVYFPRPEIYEAHDALICIAEGSYVDQQG
PRRRLTPQHYLKSPAEMAVLFADLPEALENTVEIARRCAFKAYKRDPILPKFADDEVQEL
RLQANEGLARRLAVIPHAVSPEDYQKRLDFELDIIEGMGFPGYFLIVADFIGWTKAQNIP
VGPGRGSGAGSLVAYALTITDLDPLRYGLLFERFLNPERVSMPDFDIDFCMDRREEVIRY
VQQKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKAL
ADEPRLREEARAEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSD
MPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINRSRPLHQSADGRALYTPPPGME
GDISAIPLDDAASYALYSAAKTVAVFQVESSGMMDALKRMKPNCIEDIVALVALYRPGPM
ENIPKYCEVKNGLSERELLHPSVDHILDETQGIIVYQEQVMEIARQMAGYSLGGADLLRR
AMGKKIQEAMDAERPKFLAGAADNGVDEKTAKATWDLLDKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDLHLTDKLAIYFDEVRKGLSLPYIPPCVNRSQARFDVAEGA
LVYGLGALKNVGVEAMGLITNGRGDRPFSTVFDFARRVDLKRVGKRPLEMLARAGAFDQL
DRNRHRVFDSLDDLVAYSAAVHEQRNSSQVSLFGEAGEDLPEPRLSPVPNWLPAVQLAEE
FKAIGFYLSGHPLDDYMSSLKRSGVITLDQLSEKAKEGPLVAKLAGIVAGRQERKSARGN
RFAFVQLSDTTGAFEATMFSDTLETSREYLEAGSKIVLSVEATMEAEQLKLLCRSVQPMD
GAVAQAGGSGLRIYLDTPLAIEPVATVLREAARATKLGAKGPISFCLLDDSLPGEVDMDL
GQNFPVTPQIKGALKSLEGVLMVEDL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagaatccaaaattcatccatcttcgagttcacagcgaatattcactgctcgag
ggggccgtacggctcaagaaattgcctgatttggcggtgtctatgggcatgccggccatt
gcggtgacggataccaacaatatgttttgcgccctggagttttcggaagcggcgtccaag
gcgggtattcagccaatcatcggctgccaggtggatatggcctatgaccccgcacctgcg
actgaaaagccgcgcgctccggccgccttggtgcttttggcgcaaaatgagcgcgggtat
gaaaacctcatggcgctcaactcctgcctctatctggacagcgacggaacgctgccgcag
gtgcaaatggcgcagctggccgcccatgcggagggtgtgatctgcctgaccggcgggccc
aatgggcctttggggaaattgctgcaaaatggtcagaccgccaaggcgcaggctttactt
gaaggtttggcacaggcctttggagatcggctttatgtggagctgcaacgtcatcccagc
gaggatgggcgtatgcccgacgctgaaacgctcagcgaacgtggcttggttgaaatggcc
tatgcgatggatttgccgttggtggccaccaacgatgtgtatttccccaggccggaaatc
tacgaggcccatgatgcgttgatctgcattgcggaaggctcttatgtggatcaacaaggt
ccgagacgacgcctcaccccacagcattacctcaaatccccggcagaaatggctgtgctc
tttgcggatttgccggaggccttggagaatacagtcgaaatcgcccgccgctgcgcgttc
aaagcctataagcgcgatccaattttgccgaaatttgccgatgatgaggtgcaagaactg
cggctacaagccaatgaggggctggcgcgccgtttggctgtgatcccccatgcggtttcg
cctgaggactatcaaaagcggctcgatttcgagctggacatcatcgagggcatgggattc
cccggctatttcttgatcgtggcggattttatcggttggaccaaagcgcaaaacatcccg
gtagggccggggcgcggttcaggcgcgggctcgctcgtggcctatgccttgacgatcacg
gatctggatcctctgcgctatggcttgctgtttgagcgatttttgaacccggaacgggtc
tcaatgcccgattttgacatcgatttttgcatggatcgtcgtgaagaggtgatccgctat
gtccaacaaaaatatggccgtgaccgggtggggcaaatcatcacctttggggccttattg
tcgaaagcggctgtgcgcgacattgggcgggtgctgcaaatgccctatgggcaggtagac
cgcttgtctaaaatgatcccggttgaaggggttaaaccggtgagtatcgaaaaggcgctg
gccgatgagccgcgtctgcgcgaggaagcacgggcggaagaggttgtagatcgactgttg
acctatggccagcaagtggaagggctgctgcggaatgcctcaacccatgcggcgggcgtg
gtgattggcgatcggccattggatcaattggtgccgctttatcaagatccgcgctcggac
atgccggcaacgcagtttaatatgaaatgggtcgagcaggccggcctggttaaattcgat
tttttgggcctcaaaacgctaaccgttattcaaaatgcggtggatttaatcaatcgctcg
cgtccgctccatcaatcggccgatgggcgcgcgctctatacgccgccgcccggaatggag
ggcgatatcagcgccattcctttggacgatgcggcctcctatgcactctattccgcggcg
aaaaccgtggcggtttttcaggtggaatccagcggaatgatggatgcgctgaagcgtatg
aagcccaactgcattgaagacatcgtggccttggtggcgctctatcggccggggccgatg
gaaaatatcccaaaatattgtgaggtcaaaaacggattaagcgagcgtgagctgctgcat
ccttcggtcgatcatatcttggatgagacgcagggcattattgtttaccaagagcaggtg
atggaaattgcgcgtcaaatggcgggctattctctggggggcgccgatttgttgcgccgc
gccatgggcaaaaaaattcaagaggcgatggacgcggaacggcccaagtttttggccggc
gcggcggacaatggggtggatgaaaaaaccgccaaagcgacctgggatctgctcgataaa
ttcgccaactatggctttaacaaatcccatgcggccgcctatgcggtggtgagctatcag
accgcttggctcaaggccaatcatccggttgagtttatggccggggttatgaattgtgat
ctgcatctcacagataagctggcgatctattttgatgaagtgcgcaaagggctcagtctc
ccctacatccctccttgtgtgaatcgctcgcaagcacggtttgacgtggctgagggcgct
ttggtctatgggcttggcgcgttgaaaaatgtcggtgttgaggcgatggggctgattacc
aacggccgcggcgatcggccctttagcaccgtgtttgattttgcccggcgtgtggatctc
aaacgtgtgggcaaaagaccgcttgagatgctcgcgcgggctggggcgtttgatcaattg
gaccgtaatcggcacagggtctttgacagtttggatgatcttgtcgcctattcggcggca
gtgcatgagcagcgcaattcgagccaagttagcctttttggcgaggccggtgaggatctg
cctgaaccgcgcctatctcccgtgcccaattggttgcctgcggtgcaattggcagaagaa
tttaaggcgattggcttttacctgtccggtcacccgctggatgactatatgtcctcgctc
aaacgctctggggtcattacgcttgaccagctgagtgaaaaagccaaggagggcccgctt
gttgccaaattggccggtattgtcgccgggcgacaggagcgtaaatctgcgcggggcaat
cgatttgcctttgtgcagctgagcgatacaaccggcgcttttgaggccaccatgtttagc
gatacgcttgagacctcccgcgaatatcttgaggcgggctcgaagattgtcttgagcgtt
gaggcgacgatggaggccgagcagctgaaattgctgtgccgctcggtacagcccatggat
ggggcggtggcccaggcgggcggttctggcttgcggatctatcttgatacgccccttgcg
attgagcctgtcgccacggttctgcgagaggcggcgcgcgccaccaagctgggcgccaag
ggtccgatttccttttgtctgctcgatgacagcctgcccggcgaggttgacatggacctc
ggccaaaacttccccgtaacgccgcaaatcaaaggcgctttgaaaagccttgaaggcgta
ttgatggtggaagatttatag
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