Planktomarina temperata: RCA23_c21650
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Entry
RCA23_c21650 CDS
T03229
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptp
Planktomarina temperata
Pathway
ptp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RCA23_c21650 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptp03021
]
RCA23_c21650 (rpoD)
Transcription machinery [BR:
ptp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RCA23_c21650 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
FTCD_C
Med21
DUF5098
DUF1451
Motif
Other DBs
NCBI-ProteinID:
AII87692
UniProt:
A0AAN0RK92
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All DBs
Position
complement(2315515..2317485)
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AA seq
656 aa
AA seq
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MAAKDNDDRKQDADAKEPMIDMSQTAVKKMIGDARERGYITYDQLNTVLPPDQVSSDQIE
DVMSMLSEMGIQVTEEHESEEDEDKGPTDLVASNQNRDVALAGANNEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVI
DLETTFGHHMGEEEETPVVAAPVDTESSASTGPELDADGNPIIADDDDDDEGANLSLAAM
EAALKPKVLETLDLIASDYILLSEMQDVRISATLNEDESFSDGAEAKYQKLRSEIVELVN
ELHLHNNRIEALIDQLYGINRRVMSIDSSMVKLADQARINRREFIDAYRGRELDPNWLTD
MGEKTGRGWTMFMERSVDKVEELRAEMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKK
EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKV
MKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREER
VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggataacgacgaccgcaagcaagatgccgacgccaaagaaccgatgatc
gatatgagccaaacggctgtcaaaaagatgatcggtgatgcgcgagaacggggctatatc
acttatgatcaactaaacacagttttgccgcccgatcaggtgtcgtcagatcaaatcgaa
gatgtcatgtcgatgctctccgaaatgggcattcaggtgaccgaagagcatgaatctgag
gaagatgaagacaaaggtcccaccgatttggtggcttccaatcaaaaccgcgatgtggcg
ctagctggggccaataacgaaaaactagaccggacggatgatccggtgcgtatgtatctg
cgtgaaatgggctcggtggagctcttgagccgcgagggcgagattgccattgccaagcgg
attgaagcgggccgcaatacaatgattttagggctctgcgagagcccgttgacatttcaa
gcgatcaccatctggcgcgacgaattgctgagtgaagatattttgctgcgcgatgtgatt
gatctggaaaccacctttggtcaccacatgggtgaagaggaagagacccctgttgtagcg
gcgccagtggacacggaaagctcagccagcaccggccctgagctggatgcggatggcaac
cccatcattgccgatgatgacgacgatgacgaaggggccaatctgtcgctggccgctatg
gaagcggctctaaagcctaaagtgttggagacgctggacctgattgcctctgattacatc
cttctatccgagatgcaggatgtgcgtatctcggccactttgaacgaggatgagagtttc
tccgatggggccgaggccaaatatcaaaagctccgctctgaaattgttgagctggtgaat
gaattgcacctgcacaacaaccggattgaggcgctgattgaccagctctacggcattaat
cgccgggtgatgtcgattgacagctccatggtgaaactcgcagaccaagcgcggatcaac
cgccgtgagttcatcgatgcctatcgtggtcgcgagctggatcccaactggttgaccgat
atgggcgagaaaacgggccggggctggaccatgttcatggagcgtagtgtcgacaaagtt
gaagagctccgcgcagagatggcgcaggttggccaatatgttgggctcgatatctccgaa
ttccgccgcattgtgcaacaggtgcaaaaaggtgagaaagaggcccgtcaggccaagaaa
gaaatggttgaggccaatctgcgtttggtgatttccattgccaaaaaatacacaaatcgc
gggctgcagtttttggatttgatccaagagggcaatattggcctcatgaaagcggtcgat
aagtttgaatatcgccgcggctataagttctccacctacgccacatggtggatccgccaa
gcgatcacccgctctattgcagaccaggcgcgcaccatccgtattcctgtgcatatgatc
gaaacgatcaacaagctggtgcgtaccgggcgccaaatgctgcatgaaattggccgtgaa
cccacgccagaggaattggcagccaagctgcaaatgcctttggaaaaagtgcgcaaggtc
atgaaaattgccaaagagccaatttccttggagacgccaattggcgatgaggaagattcg
cagctgggtgattttattgaggataaaaacgctgttttgccactcgacagcgcgattcaa
gaaaacttgaaggaaaccacaactcgggtcttggccagcttgacgccacgcgaagagcgg
gtgctgcggatgcgctttggcatcgggatgaatacagatcacactttggaagaagtggga
caacaattcagcgtgacccgcgaacgtattcgccagattgaagccaaagccctgcgcaag
ctcaaacacccaagccgcagtcgtaaattgcggagctttctcgatcaatag
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