Planktomarina temperata: RCA23_c28910
Help
Entry
RCA23_c28910 CDS
T03229
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCA23_c28910 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptp03019
]
RCA23_c28910 (pnp)
03016 Transfer RNA biogenesis [BR:
ptp03016
]
RCA23_c28910 (pnp)
Enzymes [BR:
ptp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RCA23_c28910 (pnp)
Messenger RNA biogenesis [BR:
ptp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RCA23_c28910 (pnp)
Transfer RNA biogenesis [BR:
ptp03016
]
Prokaryotic type
tRNA degradation factors
RCA23_c28910 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AII88393
UniProt:
A0AAN0RLG0
LinkDB
All DBs
Position
3062837..3064972
Genome browser
AA seq
711 aa
AA seq
DB search
MFTETKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKSQKPGQDFFPLT
VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTIDDMHNLRQNPEQR
LDLVVAGTKDAVMMVESEAYELSEDEMLGAVAFAHEQIQPVIDLIVDLAEDCAKEPFDFQ
APDYSDLFAAVSAAGEEAMRAAYAITDKQERTSAVAAAKDAIKASLSEEQLADENLGSAL
KKLESKVLRGDVVKNGKRIDGRALDTVRAINCETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQMIDALHGTYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGEYA
VLTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITQDIMKKALAQAKAGRLHILGE
MGKSISGAQEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGVIKI
ASPNGDSIKTAYDMIHAIVAEPEENAIYKGKVVKVVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLAMKMVNQETGEEIAADEASEG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttacagaaactaaaaaatccattcagtggggcgaagaaacccttactttggaaaca
ggtaaggttgcccgtcaagccgatggcaccgtaattgcgactttgggtgaaacctcagtt
atggcgaacgtaacattcgccaaaagccaaaaacccggtcaggactttttccctctgact
gtacattacaatgaaaaatattacgccgccggtaaaattccaggtggctttttcaaacgt
gaagcgcgtccaactgaaaaagagacgctgacatctcgcttgatcgatcgcccaatccgg
cctttgttcgtgccgggcttcaaaaacgaagtcttggtgatctgtaccgttctgtctcat
gacttggtcaatgaccctgacatggttgcgatgatcgcggcctcggcggctctgaccatt
tcgggcgcaccattcatgggcccaatcgcaggcgcgcgtgtgggctttgttgatggtgaa
tatgttctcaatccaacaattgatgacatgcacaacctgcgccagaaccctgagcagcgc
ttggatctggttgtggccggcaccaaagatgcggtgatgatggttgaatccgaagcctat
gagctgtctgaagatgagatgctcggcgcggttgcttttgcacatgagcaaatccagcct
gtgattgatctgatcgtggatctggcggaagattgcgcgaaagagccttttgacttccaa
gctccagattacagcgacctcttcgctgccgtatctgctgctggtgaagaggccatgcgc
gccgcttacgccatcaccgataaacaagaacgcacctctgcggttgccgcagcgaaagac
gcgatcaaagccagcctgagcgaagagcaattggccgatgaaaacctcggttctgctttg
aaaaaactggaatccaaagttctgcgcggcgatgtcgtcaagaatggcaagcgcatcgat
gggcgcgccttggatacggtacgcgcaatcaattgcgaaaccggcctgttgccacgtaca
cacggctctgctctgttcacccgtggtgagacgcagggtctggtcgtgaccactttgggc
accggcgatgatgagcaaatgatcgacgccttgcacggcacttataaatccaacttcctg
ctgcattataacttcccgccctattcggtcggcgaagttggccgctttggccctccgggc
cgccgcgaaattgggcatgggaaattggcatggcgtgcacttcaggcggttttgcctgca
gcgaccgactttccttacacgatccgtttggtctctgagatcaccgaatccaacggctct
tcctctatggcctccgtctgtggtggctcgctgtccatgatggatgcaggtgtgcctttg
aaagcacctgtggccggtgtcgccatgggtctgatcttggaagatgacggtgaatatgcc
gttctgaccgatatcttgggcgatgaagatcacctcggcgatatggacttcaaagtggcc
ggcacagaagccgggatcacctcattgcaaatggacatcaaagtggccggcattacgcag
gacattatgaaaaaagccttggcgcaagccaaagctggccgtttgcatatcttgggtgaa
atgggcaaatccatttcgggcgcgcaggaattctcggtacatgctccgcggattgaaacc
atgcaaatcccaaccgataagatccgtgaagtcatcggctctggcggtaaagtgatccgc
gagatcgttgaagtctccggcgcgaaagttgatatcaacgacgaaggcgtgattaaaatc
gccagcccgaatggcgatagcatcaaaacagcctatgacatgatccacgcgattgtggca
gagcctgaagaaaatgcgatctacaaaggcaaagttgtcaaagttgtcgacttcggcgca
tttgtaaacttcttcggcaaacgcgatggtctggtgcatgtcagccaaatcgaaaatcgc
cgcttgaaccacccctccgatgttctcaaagaaggtcaagaggtttgggtcaaactgctg
ggctttgatgatcgcggtaaggtgcgtttggccatgaaaatggtcaaccaagaaaccggc
gaagaaatcgcagccgatgaggccagcgaaggctaa
DBGET
integrated database retrieval system
