Planktomarina temperata: RCA23_c30350
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Entry
RCA23_c30350 CDS
T03229
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c30350 (addA)
Enzymes [BR:
ptp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCA23_c30350 (addA)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RCA23_c30350 (addA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AII88535
UniProt:
A0AAN0RLV4
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All DBs
Position
3208015..3211371
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AA seq
1118 aa
AA seq
DB search
MKLSDASLRQIEAAHPGRSTWLAANAGSGKTRVLTDRVARLLLDGVMPQNILCLTYTKAA
ASEMQNRLFKRLGRWTMLDDVTLLDELAALGVERDLGPDDIDRARTLFARAVEAPGGLKI
QTIHSFCAAILRRFPLEARVNPQFVEIDERAQNLLLDEVVEAIADGQGQSSFDGIAEHFT
GPDLQKFLHAILNLDHHFDSHPGADGIWKALGLPAGYDDASLARECFLPDDFQHIEELKA
LLMTKDENSNDFKAGLRLQAIPGPELTTADLPTLESVFLNKTGKAPGSAKIGSFPTKATR
AELPGMAQIEALMLRVEAGRQSRLSLNVARRSLALYDFAAEFLGTYRARKQVRGFLDFND
LIMRTRHLLSDERVATWVLFRLDGGIDHILVDEAQDTSPAQWDVIRLLAQEFTSGEGARA
DVPRTIFVVGDKKQSIYSFQGADPDGFDRMRDQFSQKLHEIDQPFQSTTLDYSFRSSSAI
LGVVDQVFANRSGLGSGSAHLAFKADLPGRVDVWPVFQAPDKTEPHHWTDPVDEVSTDHQ
DKQLADALAGHICDLIETETLTQLDDTGAAFQRKITAGDFLILVQGRQKLLFREIHRACK
EAGLPIAGADRLKVAAELAVRDIRSLLAFLALPEDNLSLAEALKSPLFGWSEQELFDLAQ
GRDSPFLWRSLQNREEEFPNTVQRLTELRDLADFKRPFELIEHILTTRGGRSALLGQLGP
EAAEGIDALVSQSLAYERSNIPNLTGFLVWLDADDLEIKRQMDSVGDKIRVMTVHGAKGL
EAPIVILPDTAPRKDPKLPEVVPHNTIAVWSPNKDLIPAALQSSLKDKQRQQEEERDRLL
YVAMTRAESWLIVMGSGDIKEGKECWHNAIQDAISALGAAPLNTVAGLGLRYEPMQLSAG
PQSDPVQPQVMKQSVPSWAIPYTKPAQAPAAPRSPSDLGGDKVLPGGAPQDAENSKRLGT
AVHRLLEVLPNAPQDQWGHIAQRLVEADIQAAAFQEARAVLQQPQLAYIFAPESLAEVDI
SAHLPELNGDPIQGSIDRLLISPTRVLAVDFKSNQIVPSEVAQVPSGLLRQMGAYAAALS
QIYPHHDIETAILWTKTLELMPLPPDLVISSLANTSPA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgagcgatgcaagcctccgacaaatcgaagcggcccacccggggcgctcaaca
tggctcgcggccaatgccggctctggaaaaacgcgcgtgctgacagatcgcgtggcgcgg
ctcttgctcgatggggtgatgccgcaaaatattctttgcctgacctatacaaaagcggcg
gcgtcggagatgcaaaaccggctgttcaaacggttggggcgctggaccatgttggacgat
gtcacgcttttggacgagctggcggcccttggcgtcgagcgcgacctcgggcccgacgac
attgatcgggcccgaacactctttgcccgcgcggtagaggcacccggtggcctgaaaatt
caaaccatccattccttctgcgccgcaatcctacggcgatttcccctggaggcgagagta
aatccacaattcgtcgagatcgatgaacgagcccaaaatcttcttcttgatgaggtggtt
gaagccattgcagatggccagggacaatccagttttgacggtatcgcagaacattttaca
gggccagacttacaaaaatttctgcatgcaattttaaatctggatcatcattttgacagc
caccccggcgcagatggtatttggaaggcattgggcctgccggctgggtatgatgacgca
tctctggcccgtgaatgtttcctaccggacgacttccaacatattgaagagcttaaagca
ctcctcatgaccaaagacgagaatagcaatgactttaaggccggtctgcgattgcaagcc
atccccggcccagagctcaccacggccgacctgccaacattggaatccgtatttttgaac
aaaacgggcaaagctccgggctcggcaaaaataggatcgtttcccacgaaagccacgcgc
gctgagctgccgggcatggcacagattgaggcccttatgttgcgcgttgaggccgggcgg
caaagccgtctgagcctgaatgtcgccagacggagcctggcgctctatgattttgcagcg
gaatttctcggcacctatcgcgcaagaaaacaggtgcgggggttcttagactttaatgat
ctcatcatgcgcacgcgccatctgctgtcggatgaacgcgtcgccacttgggtcttattt
cgcttggatggtggcattgatcatattcttgtggatgaggcccaagacacaagcccagcg
caatgggatgtgatccgccttctcgctcaagagttcacatcaggtgaaggcgcacgggca
gatgtgccccgaacaatcttcgttgtgggcgataaaaaacagtcaatttattccttccaa
ggcgcagatccggatggttttgatcggatgcgtgaccaattttcccagaaattgcacgaa
atcgatcagccttttcaatcgaccactttggattattcctttcgctcatcttcggcaatc
ttgggtgtcgtggatcaggtctttgccaatcgcagcggacttggctctgggtccgcacat
ttggcatttaaagcggatcttccaggccgcgttgatgtttggcctgtgtttcaagccccc
gacaagacagagccgcaccattggacggatcccgtggatgaggtttcaacagatcatcaa
gacaaacaattggccgatgctctggccggacatatctgtgatttgatcgaaactgagacg
ctcacgcagctggatgacacgggtgccgcctttcagcgtaaaatcacagcaggtgatttt
ttgattctggttcagggccgtcaaaaattgctgtttcgcgaaattcaccgagcctgtaag
gaagccggcctaccaatcgctggggcggatcgtttgaaagttgcggccgagctggccgtt
cgcgatattcgctccttgctggcctttttggcgctgccggaagacaatttatctttggcc
gaagcgttgaaatcaccactttttggatggtcagaacaagagctttttgatctcgcgcag
ggtcgagactcaccctttttgtggcgcagcttgcaaaaccgagaagaggaattcccaaat
acagtgcaacggctcactgagctccgcgatcttgcagatttcaagcgcccctttgagctg
atcgaacatatattgacaacccgcggcgggcggtcagctttactgggccaattgggacca
gaagccgccgaagggattgatgctttggtcagccaatctctggcctatgagcgcagcaat
attcccaatctcaccgggtttctcgtctggctggatgccgacgatctggaaatcaaacgt
cagatggacagtgttggcgacaaaattcgtgtgatgacggtccatggcgccaagggcctg
gaggcgcctatcgtaattttgcccgacacagcgccacgcaaagaccccaaactgccagag
gtggtgccccataacacaatcgcggtttggtctccaaacaaagatcttataccagccgcg
ctgcaatccagccttaaagacaagcagcgacagcaagaggaggagcgtgaccgtctactc
tatgtggccatgacccgagcggagagctggctcattgttatgggctcaggagatattaaa
gaggggaaagagtgttggcataacgccatacaggatgcgatttctgccctcggcgctgcg
ccgttgaacaccgtcgccggtttgggattgcggtatgaaccgatgcaattgtcagcgggg
ccgcaaagtgaccctgtacagcctcaggtcatgaagcaatccgtgccaagctgggcaatt
ccctataccaaaccagcccaagcccctgcagccccccgctctccatccgatttggggggc
gataaggttttgcccggtggcgcgccgcaggacgctgaaaattcaaaacgactgggaacg
gcggtgcatcggctgttggaggtcttgcccaatgcgccgcaagatcaatggggccatatc
gcacaacgtttggttgaggcagatatccaagccgctgctttccaagaggcccgcgcggtg
ctgcaacaaccacagctggcctatatttttgcccccgaaagtctggctgaagtcgatata
agtgcccatttgccagagctgaacggtgatccgatccaaggatccatagataggctgctt
atttcaccaacgcgggtattggcggtcgatttcaagtccaatcaaatcgtgccaagcgag
gttgcgcaggttccgagcggacttttaaggcagatgggggcctatgccgccgctttatca
caaatctatccccatcatgacatcgaaaccgcaattttatggacaaaaacccttgagctc
atgccgctaccgccagatcttgtgatttcatccttggcaaatacatcacctgcttga
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